Non-Coding RNA Search

Ss1.1-Pig2-87H08.5

Sequence:


               
               CTCGCCCTCCAGCCTGCGTCCATGGCCACCGCCGCGACCGAGGAGCCCTTCCCCTTCCAC
GGCCTCCTCCCAAAGAAAGAGACCGGGGCCGCTTCCTTCCTCTGCCGCTACCCGGAGTAT
GACGGGCGGGGGGTGCTCATCGCCGTCCTGGACACCGGGGTCGACCCCGGGGCTCCGGGC
ATGCAGGTCACAACGGATGGAAAACCGAAAATCATTGACATCATTGACACGACGGGAAGT
GGTGACGTGAACACAGCCACGGTAGCAGAGCCCAAGGACGGTGAACTCATTGGCCTTTCG
GGAAGAGTGCTTAAGATTCCTGCAAGCTGGACAAATCCCTCAGGCAGATACCACATTGGC
ATAAAAAATGGCTATGATTTCTACCCAAAGGCTCTCAAGGAAAGGATACAGAAAGAACGG
AAGGAAAAAATCTGGGACCCTGTACACCGAGTGGCCCTTGCAGAAGCCTGTCGAAAACAG
GAAGAGTTTGATGTTGCCAACAGTTGCCCTTCTCAAGTTGGTGCCAGTTGCTTTGATGTA
AACATTACTATGTTCTTAGAGAATTAGGAGTACTTGGAGAACTTAGTAGACTGTTTTTTC
CAAAAGTTTTAAGTTAATTTTTACTAATTTTTCTTTGCTAACTTATCCTAAAGTCAGTTT
ACATATGATCTATCAATCATTTGAAAGTTCTTAATAAAGAACACACATCAAAGTGCATAA
ATCCTCGGTGTCTAGTCATGAATTGTCACAAGGTGGGCACCTCGGATATGCAGCACCACA
GCCACTCTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCCCTCCAGCCTGCGTCCATGGCCACCGCCGCGACCGAGGAGCCCTTCCCCTTCCAC
GGCCTCCTCCCAAAGAAAGAGACCGGGGCCGCTTCCTTCCTCTGCCGCTACCCGGAGTAT
GACGGGCGGGGGGTGCTCATCGCCGTCCTGGACACCGGGGTCGACCCCGGGGCTCCGGGC
ATGCAGGTCACAACGGATGGAAAACCGAAAATCATTGACATCATTGACACGACGGGAAGT
GGTGACGTGAACACAGCCACGGTAGCAGAGCCCAAGGACGGTGAACTCATTGGCCTTTCG
GGAAGAGTGCTTAAGATTCCTGCAAGCTGGACAAATCCCTCAGGCAGATACCACATTGGC
ATAAAAAATGGCTATGATTTCTACCCAAAGGCTCTCAAGGAAAGGATACAGAAAGAACGG
AAGGAAAAAATCTGGGACCCTGTACACCGAGTGGCCCTTGCAGAAGCCTGTCGAAAACAG
GAAGAGTTTGATGTTGCCAACAGTTGCCCTTCTCAAGTTGGTGCCAGTTGCTTTGATGTA
AACATTACTATGTTCTTAGAGAATTAGGAGTACTTGGAGAACTTAGTAGACTGTTTTTTC
CAAAAGTTTTAAGTTAATTTTTACTAATTTTTCTTTGCTAACTTATCCTAAAGTCAGTTT
ACATATGATCTATCAATCATTTGAAAGTTCTTAATAAAGAACACACATCAAAGTGCATAA
ATCCTCGGTGTCTAGTCATGAATTGTCACAAGGTGGGCACCTCGGATATGCAGCACCACA
GCCACTCTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661753|emb|CAH72177.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661753|emb|CAH72177.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-123, + strand, RNAz p=0.904663

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-123, + strand, RNAz p=0.904663

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC024905, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC024905, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-188, gnl|bosTau2|chr12 (41175606-41175423)
               

               
               5-188, gnl|Hg17|chr13 (102047373-102047556)
               

               
               5-188, gnl|Mm7|chr1 (44174459-44174642)
               


               
               409-764, gnl|bosTau2|chr12 (41160746-41160370)
               

               
               409-764, gnl|Hg17|chr13 (102066744-102067105)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-188, gnl|bosTau2|chr12 (41175606-41175423)
               

               
               5-188, gnl|Hg17|chr13 (102047373-102047556)
               

               
               5-188, gnl|Mm7|chr1 (44174459-44174642)
               


               
               409-764, gnl|bosTau2|chr12 (41160746-41160370)
               

               
               409-764, gnl|Hg17|chr13 (102066744-102067105)

	5-188, gnl\|bosTau2\|chr12 (41175606-41175423)
	5-188, gnl\|Hg17\|chr13 (102047373-102047556)
	5-188, gnl\|Mm7\|chr1 (44174459-44174642)

	409-764, gnl\|bosTau2\|chr12 (41160746-41160370)
	409-764, gnl\|Hg17\|chr13 (102066744-102067105)