Non-Coding RNA Search

Ss1.1-Pig2-88H05.5

Sequence:


               
               ACAGCCTTCACGCTCGGGGAGCAGATCTCTCCCCCGGGCAGGAAGTTCCCAGAGGGCCCA
AGCTCCATTCCTCAGCCGCAGTGTCCTCTAGTGGCGAGGAGGGTGAAGGCCGGAGGAGGC
CGCGTCTGGAGGCGGAGGGCGGGGCCAGATGCGGAGCCTGGAAGGGAGACCCTGCCAGCC
AATGAGGGGGTCGAGGACCACACTGTCCCTGTCTGTGTCCTGGGACCACGTGAGGATGCT
GCAGTGGCTTCTTGTCTTCCCTGCTCTGGGCCTTGGGGTCTGGGGTAATTCCTCCTGGGA
TGAAACACAAGCTAAACACCAGTCAGAGGGGCCTCAGGACCTGTTCGGCAACATCTCCCA
GCTCATTGATAAAGGCAGACTGGGTTTTGATGGCGTCTCCACCGTGGTCTCTCGCAAGGA
GTGGGGGGCGGACACTGTTGGTTGCTGTGCCCCACTGGCCCTGCCAGTGGACTACCTCAT
CATGCACCATGTCCCTGGGCTGGAGTGTCACAACCAGACCGGGTGCAGTCAGAGGCTGCG
GGAGCTGCGGGCACATCATGTGCGCAATGGCTGGTGCGACGTGGCCTACAACTTCCTGGT
TGGGGACGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCCTTCACGCTCGGGGAGCAGATCTCTCCCCCGGGCAGGAAGTTCCCAGAGGGCCCA
AGCTCCATTCCTCAGCCGCAGTGTCCTCTAGTGGCGAGGAGGGTGAAGGCCGGAGGAGGC
CGCGTCTGGAGGCGGAGGGCGGGGCCAGATGCGGAGCCTGGAAGGGAGACCCTGCCAGCC
AATGAGGGGGTCGAGGACCACACTGTCCCTGTCTGTGTCCTGGGACCACGTGAGGATGCT
GCAGTGGCTTCTTGTCTTCCCTGCTCTGGGCCTTGGGGTCTGGGGTAATTCCTCCTGGGA
TGAAACACAAGCTAAACACCAGTCAGAGGGGCCTCAGGACCTGTTCGGCAACATCTCCCA
GCTCATTGATAAAGGCAGACTGGGTTTTGATGGCGTCTCCACCGTGGTCTCTCGCAAGGA
GTGGGGGGCGGACACTGTTGGTTGCTGTGCCCCACTGGCCCTGCCAGTGGACTACCTCAT
CATGCACCATGTCCCTGGGCTGGAGTGTCACAACCAGACCGGGTGCAGTCAGAGGCTGCG
GGAGCTGCGGGCACATCATGTGCGCAATGGCTGGTGCGACGTGGCCTACAACTTCCTGGT
TGGGGACGATGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47523362|ref|NP_998902.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47523362|ref|NP_998902.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               392-569, + strand, RNAz p=0.884335
               

               
               491-604, + strand, RNAz p=0.506153

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-569, + strand, RNAz p=0.884335
               

               
               491-604, + strand, RNAz p=0.506153

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               392-604, gnl|bosTau2|chr3 (2426961-2427173)
               

               
               392-604, gnl|echTel1|scaffold_230919 (1458-1201)
               

               
               392-604, gnl|hg17|chr1 (150130664-150130917)
               

               
               392-604, gnl|Hg17|chr1 (150130920-150130705)
               

               
               392-604, gnl|loxAfr1|scaffold_8659 (59074-58822)
               

               
               392-604, gnl|mm7|chr3 (90859075-90858833)
               

               
               392-604, gnl|Mm7|chr3 (90858828-90859040)
               

               
               392-604, gnl|panTro1|chr1_random (24053746-24053999)
               

               
               392-604, gnl|rheMac2|chr1 (131873543-131873797)
               

               
               392-604, gnl|rn3|chr2 (182967933-182967691)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               392-604, gnl|bosTau2|chr3 (2426961-2427173)
               

               
               392-604, gnl|echTel1|scaffold_230919 (1458-1201)
               

               
               392-604, gnl|hg17|chr1 (150130664-150130917)
               

               
               392-604, gnl|Hg17|chr1 (150130920-150130705)
               

               
               392-604, gnl|loxAfr1|scaffold_8659 (59074-58822)
               

               
               392-604, gnl|mm7|chr3 (90859075-90858833)
               

               
               392-604, gnl|Mm7|chr3 (90858828-90859040)
               

               
               392-604, gnl|panTro1|chr1_random (24053746-24053999)
               

               
               392-604, gnl|rheMac2|chr1 (131873543-131873797)
               

               
               392-604, gnl|rn3|chr2 (182967933-182967691)

	392-569, + strand, RNAz p=0.884335
	491-604, + strand, RNAz p=0.506153

	392-604, gnl\|bosTau2\|chr3 (2426961-2427173)
	392-604, gnl\|echTel1\|scaffold_230919 (1458-1201)
	392-604, gnl\|hg17\|chr1 (150130664-150130917)
	392-604, gnl\|Hg17\|chr1 (150130920-150130705)
	392-604, gnl\|loxAfr1\|scaffold_8659 (59074-58822)
	392-604, gnl\|mm7\|chr3 (90859075-90858833)
	392-604, gnl\|Mm7\|chr3 (90858828-90859040)
	392-604, gnl\|panTro1\|chr1_random (24053746-24053999)
	392-604, gnl\|rheMac2\|chr1 (131873543-131873797)
	392-604, gnl\|rn3\|chr2 (182967933-182967691)