Non-Coding RNA Search

Ss1.1-Pig2-88O19.5

Sequence:


               
               AGAAGCACTTTGGACCATTGGATTTGTGGCCAGCCAGCTCCCAGGCCACCACCCAAAGCC
CTGATGACCTAGTCATCTCAGGGCCCTTGACCTGGAGTCTAGGGTGCGGCCAGGCAATTG
TATGACCAACCA------------------------------------GGGCTTTCAGTG
CTAACAACGGGACAGTACCCGGCAAACAAGGACAACTGGTCCCTCTACCAGGAGGTGGCC
TGGGGCTCTTGCTTCCTGACAGCATCTGTGGTTTGGAAAACTCCCAACTCCTTGATCCCT
GGTATCTACCTCCCACCTTCTCATCTGTGGAGCAAACAGACTCAGCCCAAGCCCACCTGG
CCTGGTCTGTGGGAGACACCCACGGCCCCAGGACTGGAAGCAAGCAGGCTACGCAAGCCC
TACATCCACAGACCAGTGGCCACTCTTCTACTCCTAAGGTTAGACTGTTCCGAGCTCAGA
CCACCACTCAGAGCACTGACCCTTTCTCAGAACGCTTCCAGCCCCATTCCCCGGCCCCAG
CTGGGGCCTGCTCCTGCCCAGGCCTTCTGTCTCTTAACAAGAAGCTGACAGGTTGGGCCA
CTGTCGGCTCATTGCTGAGTACTCGGTGTTCACTCTGCTCATCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCACTTTGGACCATTGGATTTGTGGCCAGCCAGCTCCCAGGCCACCACCCAAAGCC
CTGATGACCTAGTCATCTCAGGGCCCTTGACCTGGAGTCTAGGGTGCGGCCAGGCAATTG
TATGACCAACCA------------------------------------GGGCTTTCAGTG
CTAACAACGGGACAGTACCCGGCAAACAAGGACAACTGGTCCCTCTACCAGGAGGTGGCC
TGGGGCTCTTGCTTCCTGACAGCATCTGTGGTTTGGAAAACTCCCAACTCCTTGATCCCT
GGTATCTACCTCCCACCTTCTCATCTGTGGAGCAAACAGACTCAGCCCAAGCCCACCTGG
CCTGGTCTGTGGGAGACACCCACGGCCCCAGGACTGGAAGCAAGCAGGCTACGCAAGCCC
TACATCCACAGACCAGTGGCCACTCTTCTACTCCTAAGGTTAGACTGTTCCGAGCTCAGA
CCACCACTCAGAGCACTGACCCTTTCTCAGAACGCTTCCAGCCCCATTCCCCGGCCCCAG
CTGGGGCCTGCTCCTGCCCAGGCCTTCTGTCTCTTAACAAGAAGCTGACAGGTTGGGCCA
CTGTCGGCTCATTGCTGAGTACTCGGTGTTCACTCTGCTCATCTCCCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-132, - strand, RNAz p=0.939069
               

               
               293-390, - strand, RNAz p=0.999404
               

               
               468-612, - strand, RNAz p=0.916825

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-132, - strand, RNAz p=0.939069
               

               
               293-390, - strand, RNAz p=0.999404
               

               
               468-612, - strand, RNAz p=0.916825

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-132, gnl|bosTau2|chr28 (19297630-19297765)
               

               
               1-132, gnl|canFam2|chr4 (24438220-24438469)
               

               
               1-132, gnl|dasNov1|scaffold_177374 (3466-3192)
               

               
               1-132, gnl|hg17|chr10 (71730082-71730367)
               

               
               1-132, gnl|Hg17|chr10 (71730221-71730088)
               

               
               1-132, gnl|loxAfr1|scaffold_19270 (35547-35830)
               

               
               1-132, gnl|mm7|chr10 (61099646-61099448)
               

               
               1-132, gnl|oryCun1|scaffold_174238 (54513-54284)
               

               
               1-132, gnl|panTro1|chr8 (72900176-72900461)
               

               
               1-132, gnl|rheMac2|chr9 (66715734-66715451)
               

               
               1-132, gnl|rn3|chr20 (28963664-28963427)
               


               
               133-612, gnl|bosTau2|chr28 (19297805-19298282)
               

               
               133-612, gnl|Hg17|chr10 (71730067-71729573)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-132, gnl|bosTau2|chr28 (19297630-19297765)
               

               
               1-132, gnl|canFam2|chr4 (24438220-24438469)
               

               
               1-132, gnl|dasNov1|scaffold_177374 (3466-3192)
               

               
               1-132, gnl|hg17|chr10 (71730082-71730367)
               

               
               1-132, gnl|Hg17|chr10 (71730221-71730088)
               

               
               1-132, gnl|loxAfr1|scaffold_19270 (35547-35830)
               

               
               1-132, gnl|mm7|chr10 (61099646-61099448)
               

               
               1-132, gnl|oryCun1|scaffold_174238 (54513-54284)
               

               
               1-132, gnl|panTro1|chr8 (72900176-72900461)
               

               
               1-132, gnl|rheMac2|chr9 (66715734-66715451)
               

               
               1-132, gnl|rn3|chr20 (28963664-28963427)
               


               
               133-612, gnl|bosTau2|chr28 (19297805-19298282)
               

               
               133-612, gnl|Hg17|chr10 (71730067-71729573)

	1-132, - strand, RNAz p=0.939069
	293-390, - strand, RNAz p=0.999404
	468-612, - strand, RNAz p=0.916825

	1-132, gnl\|bosTau2\|chr28 (19297630-19297765)
	1-132, gnl\|canFam2\|chr4 (24438220-24438469)
	1-132, gnl\|dasNov1\|scaffold_177374 (3466-3192)
	1-132, gnl\|hg17\|chr10 (71730082-71730367)
	1-132, gnl\|Hg17\|chr10 (71730221-71730088)
	1-132, gnl\|loxAfr1\|scaffold_19270 (35547-35830)
	1-132, gnl\|mm7\|chr10 (61099646-61099448)
	1-132, gnl\|oryCun1\|scaffold_174238 (54513-54284)
	1-132, gnl\|panTro1\|chr8 (72900176-72900461)
	1-132, gnl\|rheMac2\|chr9 (66715734-66715451)
	1-132, gnl\|rn3\|chr20 (28963664-28963427)

	133-612, gnl\|bosTau2\|chr28 (19297805-19298282)
	133-612, gnl\|Hg17\|chr10 (71730067-71729573)