Non-Coding RNA Search

Ss1.1-Pig2-90G07.5

Sequence:


               
               TCTTCCGGCGGGGCCTCTCCAGAATGGTCCTTCTTTCCACCTCACTGCTTAGGAACGCTC
TGCCGGCCCCCTTCTTTGTCACCAGGGCACTTTGACCTTGACTTTCTTTTCCTTCTCAGA
CGACCAAGGTCTGTGCTCTTCCTCCGGTATTCGAGATTCTTCCTGTGAACTCGCTGAAGG
CGAGGAACCAGACGCTGGCCCCGCCCTTCCCCGAGCTGAGGTGCCTTAGCCTGGCCTACA
ACAAGATCGCAAAGGAAGATGCTGTCCTGCCAGTAGCTCTGTTCCCCTCTCTCTGCGAAC
TCATCTTTCACAACAACCCTCTGGTGGCCCATACACGAGGGGTGCCTCCACTGCTCAAAA
GCTTCCTCCAGGAGCGGCTGGGAATCCACTTAATTCGAAGGAAGATAGTAAAGGCTAAGC
ATCATATTTTGATGCCTCGGAGGGACTCAAGGAAGGTGAAAACTCAAGTCCCAAAGGTAC
CAAAGCAGCCTCTGCTTCTCCATCATCCGCCTGTGACCACAATCCAGTCTTCCTCAAAGG
AGGGGCTGGAGTCCGAGGCGGAGCTCATGAAAGAGCTGCCCACCAGTAACTCCGGTTCCG
TGAAGCGAGAGATGCCCATCGAGGGCCTGGAGGGCCTTTCCCTGTCCCACCGGACCTTCG
TGCCACTGCCTCCCATCTGCTCCGACTCCACTGTGCAGAGTGAAGAGACAGCCCACCAAA
GCGATGCCCCCGGCCGCCTGAGCCCAGACCGCCTGTCAGACGAGGACATCAAAAGCACAG
AGTCCGTCTTCTTGACCCAGGTCAGTGGGCTGTCTTCCTGCATCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCCGGCGGGGCCTCTCCAGAATGGTCCTTCTTTCCACCTCACTGCTTAGGAACGCTC
TGCCGGCCCCCTTCTTTGTCACCAGGGCACTTTGACCTTGACTTTCTTTTCCTTCTCAGA
CGACCAAGGTCTGTGCTCTTCCTCCGGTATTCGAGATTCTTCCTGTGAACTCGCTGAAGG
CGAGGAACCAGACGCTGGCCCCGCCCTTCCCCGAGCTGAGGTGCCTTAGCCTGGCCTACA
ACAAGATCGCAAAGGAAGATGCTGTCCTGCCAGTAGCTCTGTTCCCCTCTCTCTGCGAAC
TCATCTTTCACAACAACCCTCTGGTGGCCCATACACGAGGGGTGCCTCCACTGCTCAAAA
GCTTCCTCCAGGAGCGGCTGGGAATCCACTTAATTCGAAGGAAGATAGTAAAGGCTAAGC
ATCATATTTTGATGCCTCGGAGGGACTCAAGGAAGGTGAAAACTCAAGTCCCAAAGGTAC
CAAAGCAGCCTCTGCTTCTCCATCATCCGCCTGTGACCACAATCCAGTCTTCCTCAAAGG
AGGGGCTGGAGTCCGAGGCGGAGCTCATGAAAGAGCTGCCCACCAGTAACTCCGGTTCCG
TGAAGCGAGAGATGCCCATCGAGGGCCTGGAGGGCCTTTCCCTGTCCCACCGGACCTTCG
TGCCACTGCCTCCCATCTGCTCCGACTCCACTGTGCAGAGTGAAGAGACAGCCCACCAAA
GCGATGCCCCCGGCCGCCTGAGCCCAGACCGCCTGTCAGACGAGGACATCAAAAGCACAG
AGTCCGTCTTCTTGACCCAGGTCAGTGGGCTGTCTTCCTGCATCTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33620423|tpg|DAA00368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33620423|tpg|DAA00368.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-135, - strand, RNAz p=0.977135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-135, - strand, RNAz p=0.977135

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               13-245, gnl|bosTau2|chr8 (11596567-11596338)
               

               
               13-245, gnl|canFam2|chr21 (26560338-26560043)
               

               
               13-245, gnl|dasNov1|scaffold_51273 (6888-7182)
               

               
               13-245, gnl|echTel1|scaffold_319597 (64528-64238)
               

               
               13-245, gnl|hg17|chr11 (74247808-74248094)
               

               
               13-245, gnl|Hg17|chr11 (74248089-74247851)
               

               
               13-245, gnl|loxAfr1|scaffold_12637 (4590-4301)
               

               
               13-245, gnl|mm7|chr7 (95937410-95937124)
               

               
               13-245, gnl|Mm7|chr7 (95937126-95937373)
               

               
               13-245, gnl|monDom2|scaffold_74 (2319790-2319539)
               

               
               13-245, gnl|oryCun1|scaffold_183812 (118426-118718)
               

               
               13-245, gnl|panTro1|chr9 (75535461-75535747)
               

               
               13-245, gnl|rheMac2|chr14 (73029523-73029809)
               

               
               13-245, gnl|rn3|chr1 (157348114-157347835)
               


               
               454-802, gnl|bosTau2|chr8 (11583985-11583640)
               

               
               454-802, gnl|Hg17|chr11 (74237157-74236806)
               

               
               454-802, gnl|Mm7|chr7 (95944962-95945289)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-245, gnl|bosTau2|chr8 (11596567-11596338)
               

               
               13-245, gnl|canFam2|chr21 (26560338-26560043)
               

               
               13-245, gnl|dasNov1|scaffold_51273 (6888-7182)
               

               
               13-245, gnl|echTel1|scaffold_319597 (64528-64238)
               

               
               13-245, gnl|hg17|chr11 (74247808-74248094)
               

               
               13-245, gnl|Hg17|chr11 (74248089-74247851)
               

               
               13-245, gnl|loxAfr1|scaffold_12637 (4590-4301)
               

               
               13-245, gnl|mm7|chr7 (95937410-95937124)
               

               
               13-245, gnl|Mm7|chr7 (95937126-95937373)
               

               
               13-245, gnl|monDom2|scaffold_74 (2319790-2319539)
               

               
               13-245, gnl|oryCun1|scaffold_183812 (118426-118718)
               

               
               13-245, gnl|panTro1|chr9 (75535461-75535747)
               

               
               13-245, gnl|rheMac2|chr14 (73029523-73029809)
               

               
               13-245, gnl|rn3|chr1 (157348114-157347835)
               


               
               454-802, gnl|bosTau2|chr8 (11583985-11583640)
               

               
               454-802, gnl|Hg17|chr11 (74237157-74236806)
               

               
               454-802, gnl|Mm7|chr7 (95944962-95945289)

	13-245, gnl\|bosTau2\|chr8 (11596567-11596338)
	13-245, gnl\|canFam2\|chr21 (26560338-26560043)
	13-245, gnl\|dasNov1\|scaffold_51273 (6888-7182)
	13-245, gnl\|echTel1\|scaffold_319597 (64528-64238)
	13-245, gnl\|hg17\|chr11 (74247808-74248094)
	13-245, gnl\|Hg17\|chr11 (74248089-74247851)
	13-245, gnl\|loxAfr1\|scaffold_12637 (4590-4301)
	13-245, gnl\|mm7\|chr7 (95937410-95937124)
	13-245, gnl\|Mm7\|chr7 (95937126-95937373)
	13-245, gnl\|monDom2\|scaffold_74 (2319790-2319539)
	13-245, gnl\|oryCun1\|scaffold_183812 (118426-118718)
	13-245, gnl\|panTro1\|chr9 (75535461-75535747)
	13-245, gnl\|rheMac2\|chr14 (73029523-73029809)
	13-245, gnl\|rn3\|chr1 (157348114-157347835)

	454-802, gnl\|bosTau2\|chr8 (11583985-11583640)
	454-802, gnl\|Hg17\|chr11 (74237157-74236806)
	454-802, gnl\|Mm7\|chr7 (95944962-95945289)