Non-Coding RNA Search

Ss1.1-Pig2-90O16.5

Sequence:


               
               GAGAGACCTTAAATGTAATTAGTAATGCATAGTGAGCCTGATTAGCTGACCTGTGCATCA
CAAGTCACTTGTCTTTAGCCCAAGAGGAAGGTTTCCTTTCTGAACTGACCTATGATCTCA
GAGTAGCCCACCACCTCTCGTTGTTGCTTCCAACAGCCTTCCTGATTACTGGAAGACCCC
GACAGGGTTTCTATGATATCTAGCTCTAGTTTTGTGCCCTAGAACTAAAAAAGGGCAGGG
AAGGCTGAAACAGGTTCTGTTGGTAAAATATTTGTTAGAAGTCTTCCATTTGTTATCCTC
CTGCCTCTAGTATTATGTAAAATGTGATGAAAAGAGCTTTGCCTCAGCAAACACAGTGAG
ACCTTGTCTTTGTCCTTCAAACCTATTTAGCACTAGTGATACTTTAAGCCCAGAATATGG
ATGGAAGACAGCTCAGAGGGTTCTGTTTCATTTTATTTTGTTTTTCCCCTCTTCATCTCC
CTCCTCCTCCCCACTCCATTTTGGGCTAAGGAAGAGCATTTATTTGCTTCTTAGCTCACT
GAACTCTCTCACGGACGAATAGATGTCTCACACTGGTCCACAGGATCACATTGCGTCTCA
GCGGTGATGATTGTTCTTGTGTCCTCCCGTCAGGTAGGGAGGGAGTGACTGATGCCGGGA
AATAAACTGTGCAGCTGGCCTTTTCTTGCTGGTGGGCACGAAAGTATGCATTGACGTCAG
CGTCGGCTGGTCGGTATTCAGTTTGTGCAGTGGGTCAGCTCCGTCCCTACACTCTGCTAC
CTTCCATTTGTCAGCTTTCATCTCCTCCGATTGTCGTCTTCGCCCCTGTTCTAATAATGA
CAAAAGATGTGTAACTCTTCGGCAAGACTGGATATCTGAATTCTACTGGTAATTTTAGAA
ATGAGGATAAATTTAACCCTAAAGCCATCTGCTTCTCTGTAGGAGGATTTTTTAAATTAT
AAATTAGACATTATAGCACACTGCTGGAGATTAAAAATTGCCTTGGTTTGTTAATTCCTG
GAAACAGTTTACTTTTTCTTAGCTTGAAGACTAGTTTTCAATGCTTTGTGTCCTTTTTTC
CTTTTTAAAAAAATGACTTAGGAGCTCCTGTTGTGCAGTAGGTTAATGATCCAGCGTTGT
CTCTGTGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGACCTTAAATGTAATTAGTAATGCATAGTGAGCCTGATTAGCTGACCTGTGCATCA
CAAGTCACTTGTCTTTAGCCCAAGAGGAAGGTTTCCTTTCTGAACTGACCTATGATCTCA
GAGTAGCCCACCACCTCTCGTTGTTGCTTCCAACAGCCTTCCTGATTACTGGAAGACCCC
GACAGGGTTTCTATGATATCTAGCTCTAGTTTTGTGCCCTAGAACTAAAAAAGGGCAGGG
AAGGCTGAAACAGGTTCTGTTGGTAAAATATTTGTTAGAAGTCTTCCATTTGTTATCCTC
CTGCCTCTAGTATTATGTAAAATGTGATGAAAAGAGCTTTGCCTCAGCAAACACAGTGAG
ACCTTGTCTTTGTCCTTCAAACCTATTTAGCACTAGTGATACTTTAAGCCCAGAATATGG
ATGGAAGACAGCTCAGAGGGTTCTGTTTCATTTTATTTTGTTTTTCCCCTCTTCATCTCC
CTCCTCCTCCCCACTCCATTTTGGGCTAAGGAAGAGCATTTATTTGCTTCTTAGCTCACT
GAACTCTCTCACGGACGAATAGATGTCTCACACTGGTCCACAGGATCACATTGCGTCTCA
GCGGTGATGATTGTTCTTGTGTCCTCCCGTCAGGTAGGGAGGGAGTGACTGATGCCGGGA
AATAAACTGTGCAGCTGGCCTTTTCTTGCTGGTGGGCACGAAAGTATGCATTGACGTCAG
CGTCGGCTGGTCGGTATTCAGTTTGTGCAGTGGGTCAGCTCCGTCCCTACACTCTGCTAC
CTTCCATTTGTCAGCTTTCATCTCCTCCGATTGTCGTCTTCGCCCCTGTTCTAATAATGA
CAAAAGATGTGTAACTCTTCGGCAAGACTGGATATCTGAATTCTACTGGTAATTTTAGAA
ATGAGGATAAATTTAACCCTAAAGCCATCTGCTTCTCTGTAGGAGGATTTTTTAAATTAT
AAATTAGACATTATAGCACACTGCTGGAGATTAAAAATTGCCTTGGTTTGTTAATTCCTG
GAAACAGTTTACTTTTTCTTAGCTTGAAGACTAGTTTTCAATGCTTTGTGTCCTTTTTTC
CTTTTTAAAAAAATGACTTAGGAGCTCCTGTTGTGCAGTAGGTTAATGATCCAGCGTTGT
CTCTGTGGCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               120-237, - strand, RNAz p=0.999672
               

               
               404-601, - strand, RNAz p=0.992187

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-237, - strand, RNAz p=0.999672
               

               
               404-601, - strand, RNAz p=0.992187

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               404-601, BP439705 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP439705.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               404-601, BP439705 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP439705.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-1099, gnl|bosTau2|chr25 (5359669-5358585)
               

               
               10-1099, gnl|Hg17|chr11 (111070241-111071366)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1099, gnl|bosTau2|chr25 (5359669-5358585)
               

               
               10-1099, gnl|Hg17|chr11 (111070241-111071366)

	120-237, - strand, RNAz p=0.999672
	404-601, - strand, RNAz p=0.992187

	10-1099, gnl\|bosTau2\|chr25 (5359669-5358585)
	10-1099, gnl\|Hg17\|chr11 (111070241-111071366)