Non-Coding RNA Search

Ss1.1-Pig2-94L23.5

Sequence:


               
               ATTTTTTGTTAGTTGGCTCCAAAGTGGTTATTTATGTTTCCATGTCTTATGTGGTTTTGT
CTGTGGGCAGAATTCCCAGCATAAAACAATATTATGGTGCCATATGGATTGTGTTTTATG
GTTTCTCTGAGGCTTTCTGTCCCTTGCCCAAACTGGTGTTAAAGCTCTTAGAAGCACTTA
AATGGTACCTCAGCGTTGTTATAGATCTTTTTCTCGGCTTAAGATTGAGTGTGAGGCGTG
CTGGAGAGCATCTGCTCCGGCATATCTTTAAGCCCCAAACCAGCGGGAATCAGCAGAGCT
CAAAGGAAGACAAAAAAATCTGCTCCCAGGGCTACCTGGAACAGGAAGTAGTTATAATTT
GGCTGGACCTCCCAGGATATTTTCTCTTTATTTTGGGTGCACCCACAGCCACGTGGAAGG
CCTGAAGGCCAGAGATCAAACCATTGCTACAGCTGTAGCCTGAGCCACAGCAATGACCGA
TGAGGGAGCTGGGACCTTCCAGGATTTGAACCTAACCCTCTCACTTCCCTAGAAAATTCT
GGCTGACAAAGGTCCAGAATCTCCTAAAAACTGGCCCTTGGCAAATTTCAAATAAAATTT
CAAGGGCCTTGACTCCCGCTGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTGTTAGTTGGCTCCAAAGTGGTTATTTATGTTTCCATGTCTTATGTGGTTTTGT
CTGTGGGCAGAATTCCCAGCATAAAACAATATTATGGTGCCATATGGATTGTGTTTTATG
GTTTCTCTGAGGCTTTCTGTCCCTTGCCCAAACTGGTGTTAAAGCTCTTAGAAGCACTTA
AATGGTACCTCAGCGTTGTTATAGATCTTTTTCTCGGCTTAAGATTGAGTGTGAGGCGTG
CTGGAGAGCATCTGCTCCGGCATATCTTTAAGCCCCAAACCAGCGGGAATCAGCAGAGCT
CAAAGGAAGACAAAAAAATCTGCTCCCAGGGCTACCTGGAACAGGAAGTAGTTATAATTT
GGCTGGACCTCCCAGGATATTTTCTCTTTATTTTGGGTGCACCCACAGCCACGTGGAAGG
CCTGAAGGCCAGAGATCAAACCATTGCTACAGCTGTAGCCTGAGCCACAGCAATGACCGA
TGAGGGAGCTGGGACCTTCCAGGATTTGAACCTAACCCTCTCACTTCCCTAGAAAATTCT
GGCTGACAAAGGTCCAGAATCTCCTAAAAACTGGCCCTTGGCAAATTTCAAATAAAATTT
CAAGGGCCTTGACTCCCGCTGGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               43-349, + strand, RNAz p=0.991785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-349, + strand, RNAz p=0.991785

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025203, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025203, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-362, gnl|bosTau2|chr11 (56361332-56361699)
               

               
               5-362, gnl|Hg17|chr2 (24165267-24164896)
               


               
               502-622, gnl|bosTau2|chr11 (56361698-56361818)
               

               
               502-622, gnl|Hg17|chr2 (24164897-24164776)
               

               
               502-622, gnl|Mm7|chr12 (4798782-4798916)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-362, gnl|bosTau2|chr11 (56361332-56361699)
               

               
               5-362, gnl|Hg17|chr2 (24165267-24164896)
               


               
               502-622, gnl|bosTau2|chr11 (56361698-56361818)
               

               
               502-622, gnl|Hg17|chr2 (24164897-24164776)
               

               
               502-622, gnl|Mm7|chr12 (4798782-4798916)

	5-362, gnl\|bosTau2\|chr11 (56361332-56361699)
	5-362, gnl\|Hg17\|chr2 (24165267-24164896)

	502-622, gnl\|bosTau2\|chr11 (56361698-56361818)
	502-622, gnl\|Hg17\|chr2 (24164897-24164776)
	502-622, gnl\|Mm7\|chr12 (4798782-4798916)