Non-Coding RNA Search

Ss1.1-Pig2-94N11.5

Sequence:


               
               AGACTCGTTCTTGGGAGCACATGCGCCCCAAAGCCCGGTGCGCGCGGGCACACAGACTGG
CACACTGGAACACACGCGCGCGCACACACACACTCAAGCACACACGCACACTCCCACTCA
TGTTCTCTATAGGTGTGTGGGTCCAAAGTTGTGTCCTCAGGGAGGCTGAGCTGAAAAGAA
CCGGGCTTCCTTGGCGCCTGGGGCGCTCAGCGCGGCTCTCCTGGAGACTCCCCAGATGGA
CAGAAGGGAAAGAGGAATACCACCCTCCGCTTAGGGTGGTCTCCCCCGTTTCTGAGAAGA
TCAGTGCGAAACGCGGACTGCCGGACGCCTTTGGAATATGCCTGCTGAGCGGAGCAGAAA
AGAGTGTTCTTGGAGTGGTCGTGAACTTGGGCCACCTGGGCTCCCCGGCAACTTGTTTTG
CGCAGTTCTCAATGGAGCCCTGGACCCACCGGGCTCCTGGCCCGTCTGCATTTTCCCCTC
CTTTTCTTCTTCTCTCTTTTTAAAATGTATGAACTTGAAGCCGAACGCAGACAGGCGCTT
GGGATACTTTGGCGGGTAAGTGAACTGTTCCTTTTACCTATTATTTAACCCCTGGGAGTC
CAGAAACACTTAATTCCAACCTTTCCCCTTCATTTGTAAAAAGTTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTCGTTCTTGGGAGCACATGCGCCCCAAAGCCCGGTGCGCGCGGGCACACAGACTGG
CACACTGGAACACACGCGCGCGCACACACACACTCAAGCACACACGCACACTCCCACTCA
TGTTCTCTATAGGTGTGTGGGTCCAAAGTTGTGTCCTCAGGGAGGCTGAGCTGAAAAGAA
CCGGGCTTCCTTGGCGCCTGGGGCGCTCAGCGCGGCTCTCCTGGAGACTCCCCAGATGGA
CAGAAGGGAAAGAGGAATACCACCCTCCGCTTAGGGTGGTCTCCCCCGTTTCTGAGAAGA
TCAGTGCGAAACGCGGACTGCCGGACGCCTTTGGAATATGCCTGCTGAGCGGAGCAGAAA
AGAGTGTTCTTGGAGTGGTCGTGAACTTGGGCCACCTGGGCTCCCCGGCAACTTGTTTTG
CGCAGTTCTCAATGGAGCCCTGGACCCACCGGGCTCCTGGCCCGTCTGCATTTTCCCCTC
CTTTTCTTCTTCTCTCTTTTTAAAATGTATGAACTTGAAGCCGAACGCAGACAGGCGCTT
GGGATACTTTGGCGGGTAAGTGAACTGTTCCTTTTACCTATTATTTAACCCCTGGGAGTC
CAGAAACACTTAATTCCAACCTTTCCCCTTCATTTGTAAAAAGTTACC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               16-134, - strand, RNAz p=0.949201
               

               
               370-488, - strand, RNAz p=0.926072

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               16-134, - strand, RNAz p=0.949201
               

               
               370-488, - strand, RNAz p=0.926072

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               16-646, gnl|bosTau2|chr8 (60724828-60725454)
               

               
               16-646, gnl|Hg17|chr6 (166371929-166371329)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-646, gnl|bosTau2|chr8 (60724828-60725454)
               

               
               16-646, gnl|Hg17|chr6 (166371929-166371329)

	16-134, - strand, RNAz p=0.949201
	370-488, - strand, RNAz p=0.926072

	16-646, gnl\|bosTau2\|chr8 (60724828-60725454)
	16-646, gnl\|Hg17\|chr6 (166371929-166371329)