Non-Coding RNA Search

Ss1.1-Pig2-95M04.5

Sequence:


               
               GCTTCGACAACACGTACCAGGCAACCATTGGGATTGACTTCTTGTCAAAAACCATGTACT
TGGGGGATCGTACGGTGCGACTGCAGCTCTGGGACACAGCTGGCCAGGAGAGGTTCCGCA
GCCTGATCCCCAGCTACATCCGGGACTCCACGGTGGCCGTGGTGGTGTACGACATCACAA
ATCTCAACTCCTTCCAACAGACCTCTAAGTGGATCGATGACGTCAGGACAGAGAGAGGCA
GTGATGTCATCATCATGCTGGTGGGCAACAAGACGGACCTGGCCGACAAGAGGCAGATAA
CCATCGAGGAGGGGGAGCAGCGCGCCAAAGAACTGAGCGTCATGTTCATTGAGACCAGCG
CCAAGACCGGCTACAACGTGAAGCAGCTCTTCCGACGTGTGGCCTCGGCTCTGCCCGGAA
TGGAGAATGTCCAGGAGAAAAGCAAAGAAGGGATGATCGACATCAAGCTGGACAAACCCC
AGGAGCCCCCGGCCAGCGAGGGCGGCTGCTCTTGCTAATGCAGCCTGACCACCGGCTTCC
CTTGACACTATTCGCTTGTTGTGTTGCTTCCTATTGGTTAGCTTCCTAAGGGGGGTGGGA
AACGAGCTTATCCAGATGGGAGGATTTTTCTTTTCTCTCTGTCTCTAGGAGTCGGGGAGG
GGTGGGGAGGGAGGCTGGGCATCAGGGATCACGTCACTCTTAACAGCTGTTACTTAAACA
ACTATTTTTTGGTTTGGTTGTAATATATTGTACTTTATTAAGATTGCCAAAAACTGTTAA
AATTTAAAAAAAATTTAAATCATGTGTATACAACTTTTTGCCAGATAAAAATGTTGTCAT
TTTTATTTGAAAGATGTGCTTTTTTGTTTTTGTATATTTGTAAACTTATAGAGAACCTTT
TCCACACACCTCCTCCTTCCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCGACAACACGTACCAGGCAACCATTGGGATTGACTTCTTGTCAAAAACCATGTACT
TGGGGGATCGTACGGTGCGACTGCAGCTCTGGGACACAGCTGGCCAGGAGAGGTTCCGCA
GCCTGATCCCCAGCTACATCCGGGACTCCACGGTGGCCGTGGTGGTGTACGACATCACAA
ATCTCAACTCCTTCCAACAGACCTCTAAGTGGATCGATGACGTCAGGACAGAGAGAGGCA
GTGATGTCATCATCATGCTGGTGGGCAACAAGACGGACCTGGCCGACAAGAGGCAGATAA
CCATCGAGGAGGGGGAGCAGCGCGCCAAAGAACTGAGCGTCATGTTCATTGAGACCAGCG
CCAAGACCGGCTACAACGTGAAGCAGCTCTTCCGACGTGTGGCCTCGGCTCTGCCCGGAA
TGGAGAATGTCCAGGAGAAAAGCAAAGAAGGGATGATCGACATCAAGCTGGACAAACCCC
AGGAGCCCCCGGCCAGCGAGGGCGGCTGCTCTTGCTAATGCAGCCTGACCACCGGCTTCC
CTTGACACTATTCGCTTGTTGTGTTGCTTCCTATTGGTTAGCTTCCTAAGGGGGGTGGGA
AACGAGCTTATCCAGATGGGAGGATTTTTCTTTTCTCTCTGTCTCTAGGAGTCGGGGAGG
GGTGGGGAGGGAGGCTGGGCATCAGGGATCACGTCACTCTTAACAGCTGTTACTTAAACA
ACTATTTTTTGGTTTGGTTGTAATATATTGTACTTTATTAAGATTGCCAAAAACTGTTAA
AATTTAAAAAAAATTTAAATCATGTGTATACAACTTTTTGCCAGATAAAAATGTTGTCAT
TTTTATTTGAAAGATGTGCTTTTTTGTTTTTGTATATTTGTAAACTTATAGAGAACCTTT
TCCACACACCTCCTCCTTCCTGTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5R417_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5R417_PONPY

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               532-684, + strand, RNAz p=0.855498
               

               
               803-913, - strand, RNAz p=0.547046

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               532-684, + strand, RNAz p=0.855498
               

               
               803-913, - strand, RNAz p=0.547046

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC002510, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC002510, +

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               178-296, gnl|bosTau2|chr1 (88414880-88414762)
               

               
               178-296, gnl|canFam2|chr23 (33778658-33778797)
               

               
               178-296, gnl|danRer3|chr2 (14409366-14409231)
               

               
               178-296, gnl|dasNov1|scaffold_9629 (949-810)
               

               
               178-296, gnl|echTel1|scaffold_273488 (2398-2513)
               

               
               178-296, gnl|fr1|chrUn (181706321-181706188)
               

               
               178-296, gnl|hg17|chr3 (135041041-135041180)
               

               
               178-296, gnl|Hg17|chr3 (135041162-135041044)
               

               
               178-296, gnl|loxAfr1|scaffold_33271 (33381-33520)
               

               
               178-296, gnl|mm7|chr9 (102876765-102876626)
               

               
               178-296, gnl|Mm7|chr9 (102876642-102876760)
               

               
               178-296, gnl|monDom2|scaffold_24 (27246443-27246578)
               

               
               178-296, gnl|oryCun1|scaffold_188740 (1959-2097)
               

               
               178-296, gnl|panTro1|chr2_random (12638030-12637891)
               

               
               178-296, gnl|rheMac2|chr2 (153909213-153909074)
               

               
               178-296, gnl|rn3|chr8 (108190049-108189910)
               

               
               178-296, gnl|tetNig1|chr15 (5754654-5754527)
               

               
               178-296, gnl|xenTro1|scaffold_346 (966233-966372)
               


               
               454-924, gnl|bosTau2|chr1 (88409360-88408894)
               

               
               454-924, gnl|Hg17|chr3 (135030394-135029926)
               

               
               454-924, gnl|Mm7|chr9 (102895285-102895761)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-296, gnl|bosTau2|chr1 (88414880-88414762)
               

               
               178-296, gnl|canFam2|chr23 (33778658-33778797)
               

               
               178-296, gnl|danRer3|chr2 (14409366-14409231)
               

               
               178-296, gnl|dasNov1|scaffold_9629 (949-810)
               

               
               178-296, gnl|echTel1|scaffold_273488 (2398-2513)
               

               
               178-296, gnl|fr1|chrUn (181706321-181706188)
               

               
               178-296, gnl|hg17|chr3 (135041041-135041180)
               

               
               178-296, gnl|Hg17|chr3 (135041162-135041044)
               

               
               178-296, gnl|loxAfr1|scaffold_33271 (33381-33520)
               

               
               178-296, gnl|mm7|chr9 (102876765-102876626)
               

               
               178-296, gnl|Mm7|chr9 (102876642-102876760)
               

               
               178-296, gnl|monDom2|scaffold_24 (27246443-27246578)
               

               
               178-296, gnl|oryCun1|scaffold_188740 (1959-2097)
               

               
               178-296, gnl|panTro1|chr2_random (12638030-12637891)
               

               
               178-296, gnl|rheMac2|chr2 (153909213-153909074)
               

               
               178-296, gnl|rn3|chr8 (108190049-108189910)
               

               
               178-296, gnl|tetNig1|chr15 (5754654-5754527)
               

               
               178-296, gnl|xenTro1|scaffold_346 (966233-966372)
               


               
               454-924, gnl|bosTau2|chr1 (88409360-88408894)
               

               
               454-924, gnl|Hg17|chr3 (135030394-135029926)
               

               
               454-924, gnl|Mm7|chr9 (102895285-102895761)

	532-684, + strand, RNAz p=0.855498
	803-913, - strand, RNAz p=0.547046

	178-296, gnl\|bosTau2\|chr1 (88414880-88414762)
	178-296, gnl\|canFam2\|chr23 (33778658-33778797)
	178-296, gnl\|danRer3\|chr2 (14409366-14409231)
	178-296, gnl\|dasNov1\|scaffold_9629 (949-810)
	178-296, gnl\|echTel1\|scaffold_273488 (2398-2513)
	178-296, gnl\|fr1\|chrUn (181706321-181706188)
	178-296, gnl\|hg17\|chr3 (135041041-135041180)
	178-296, gnl\|Hg17\|chr3 (135041162-135041044)
	178-296, gnl\|loxAfr1\|scaffold_33271 (33381-33520)
	178-296, gnl\|mm7\|chr9 (102876765-102876626)
	178-296, gnl\|Mm7\|chr9 (102876642-102876760)
	178-296, gnl\|monDom2\|scaffold_24 (27246443-27246578)
	178-296, gnl\|oryCun1\|scaffold_188740 (1959-2097)
	178-296, gnl\|panTro1\|chr2_random (12638030-12637891)
	178-296, gnl\|rheMac2\|chr2 (153909213-153909074)
	178-296, gnl\|rn3\|chr8 (108190049-108189910)
	178-296, gnl\|tetNig1\|chr15 (5754654-5754527)
	178-296, gnl\|xenTro1\|scaffold_346 (966233-966372)

	454-924, gnl\|bosTau2\|chr1 (88409360-88408894)
	454-924, gnl\|Hg17\|chr3 (135030394-135029926)
	454-924, gnl\|Mm7\|chr9 (102895285-102895761)