Non-Coding RNA Search

Ss1.1-Pig2-96B23.5

Sequence:


               
               GGGGAAAGAGGCGAGGAGGAGCTGCAGCGAGCCGACAGCAAACCACTCTCCGGTGTAGCC
AATCCATGTGAAGCGCGCCAGATTTAAACACTACAGCCAGACTCCAGAACCGGAAGACAG
AGAGAGTGAGGTCTGGTCACGCCCTCCTATCTGGCAAAAAAGGCATGAAAAAGGGAAGGA
ATTAGAGACCCTCTGCAAGTTCGACCCCATACCAGATAATGCCAATCTTATGGCTCTCTA
CGCCACGGAGCAGCAGGATTTCAGTATTTACTCAACATGTTCTACCTGGTTTGTTCTTTG
TGTTCACTTCTTGCTAGAAGTGGCCTGAGGTACTGAAAGAAAAAGGATGAGGCAGAGAGA
TAGGCAAACTCTTAGAGGAAATGCCTCCACCAACACTCCCAATCTACCTTAAAATGCCCA
CATAGGAAATACACCTACAGAAACAACAAGAAAAAAACAACTTTTTATTGTTGCCACTGG
GAGCACCTGGCCCCCCAGTCTGCTCTGAATCATCAGAATACTTAATTATAGTCAAATGTC
AAGTCATCCTCAAGCCTGTGACCCTATCCGCAGCCAGGGTTCTATCCCCAGGCCCAGCAT
ATTCCTTGAGTGTCAGAGTTGTGGGTAACTGCATAAAAGCTACAGTATTCCCTGCTTAGG
TGGCTGCAAAAGTGGGATGGAGAGGGAGAGTGGCAAGTTGAAGAAAGCCATAAGCAAAGT
TCAATCAACAGCCCTAGAGGGCAAGAAAGGCCCAAGGATGTCAATAATCATAGGGGAAAG
GAAATGCTGAGGACAAAATCTGGAGAATGAAGGGTGGGAGAGGCTTGGACCAGGAGGCAG
TCTTGGTCCAAAAGAGCTGAGCCTGAGTCAGGGACCCTAGTGGTTATGAAGCAAAAGGCA
ATGATTAGGCGACTCAGACATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAAAGAGGCGAGGAGGAGCTGCAGCGAGCCGACAGCAAACCACTCTCCGGTGTAGCC
AATCCATGTGAAGCGCGCCAGATTTAAACACTACAGCCAGACTCCAGAACCGGAAGACAG
AGAGAGTGAGGTCTGGTCACGCCCTCCTATCTGGCAAAAAAGGCATGAAAAAGGGAAGGA
ATTAGAGACCCTCTGCAAGTTCGACCCCATACCAGATAATGCCAATCTTATGGCTCTCTA
CGCCACGGAGCAGCAGGATTTCAGTATTTACTCAACATGTTCTACCTGGTTTGTTCTTTG
TGTTCACTTCTTGCTAGAAGTGGCCTGAGGTACTGAAAGAAAAAGGATGAGGCAGAGAGA
TAGGCAAACTCTTAGAGGAAATGCCTCCACCAACACTCCCAATCTACCTTAAAATGCCCA
CATAGGAAATACACCTACAGAAACAACAAGAAAAAAACAACTTTTTATTGTTGCCACTGG
GAGCACCTGGCCCCCCAGTCTGCTCTGAATCATCAGAATACTTAATTATAGTCAAATGTC
AAGTCATCCTCAAGCCTGTGACCCTATCCGCAGCCAGGGTTCTATCCCCAGGCCCAGCAT
ATTCCTTGAGTGTCAGAGTTGTGGGTAACTGCATAAAAGCTACAGTATTCCCTGCTTAGG
TGGCTGCAAAAGTGGGATGGAGAGGGAGAGTGGCAAGTTGAAGAAAGCCATAAGCAAAGT
TCAATCAACAGCCCTAGAGGGCAAGAAAGGCCCAAGGATGTCAATAATCATAGGGGAAAG
GAAATGCTGAGGACAAAATCTGGAGAATGAAGGGTGGGAGAGGCTTGGACCAGGAGGCAG
TCTTGGTCCAAAAGAGCTGAGCCTGAGTCAGGGACCCTAGTGGTTATGAAGCAAAAGGCA
ATGATTAGGCGACTCAGACATCAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               742-915, + strand, RNAz p=0.998087
               

               
               780-924, - strand, RNAz p=0.987651

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               742-915, + strand, RNAz p=0.998087
               

               
               780-924, - strand, RNAz p=0.987651

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC000325, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC000325, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               2-127, gnl|bosTau2|chr15 (14285609-14285734)
               

               
               2-127, gnl|canFam2|chr5 (17772318-17772172)
               

               
               2-127, gnl|dasNov1|scaffold_3723 (82284-82425)
               

               
               2-127, gnl|echTel1|scaffold_303357 (41799-41677)
               

               
               2-127, gnl|hg17|chr11 (118471549-118471696)
               

               
               2-127, gnl|Hg17|chr11 (118471562-118471689)
               

               
               2-127, gnl|mm7|chr9 (44268879-44268733)
               

               
               2-127, gnl|Mm7|chr9 (44268864-44268738)
               

               
               2-127, gnl|monDom2|scaffold_2 (119499553-119499382)
               

               
               2-127, gnl|oryCun1|scaffold_136212 (1221-1076)
               

               
               2-127, gnl|panTro1|chr9_random (4698822-4698969)
               

               
               2-127, gnl|rheMac2|chr14 (117501829-117501976)
               

               
               2-127, gnl|rn3|chr8 (47321197-47321052)
               


               
               129-924, gnl|bosTau2|chr15 (14285840-14286654)
               

               
               129-924, gnl|Hg17|chr11 (118471790-118472928)
               

               
               129-924, gnl|Mm7|chr9 (44268369-44267457)
               


               
               453-915, gnl|bosTau2|chr1 (55026064-55025600)
               

               
               453-915, gnl|Hg17|chr11 (118472434-118472919)
               

               
               453-915, gnl|Mm7|chr9 (44267937-44267466)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-127, gnl|bosTau2|chr15 (14285609-14285734)
               

               
               2-127, gnl|canFam2|chr5 (17772318-17772172)
               

               
               2-127, gnl|dasNov1|scaffold_3723 (82284-82425)
               

               
               2-127, gnl|echTel1|scaffold_303357 (41799-41677)
               

               
               2-127, gnl|hg17|chr11 (118471549-118471696)
               

               
               2-127, gnl|Hg17|chr11 (118471562-118471689)
               

               
               2-127, gnl|mm7|chr9 (44268879-44268733)
               

               
               2-127, gnl|Mm7|chr9 (44268864-44268738)
               

               
               2-127, gnl|monDom2|scaffold_2 (119499553-119499382)
               

               
               2-127, gnl|oryCun1|scaffold_136212 (1221-1076)
               

               
               2-127, gnl|panTro1|chr9_random (4698822-4698969)
               

               
               2-127, gnl|rheMac2|chr14 (117501829-117501976)
               

               
               2-127, gnl|rn3|chr8 (47321197-47321052)
               


               
               129-924, gnl|bosTau2|chr15 (14285840-14286654)
               

               
               129-924, gnl|Hg17|chr11 (118471790-118472928)
               

               
               129-924, gnl|Mm7|chr9 (44268369-44267457)
               


               
               453-915, gnl|bosTau2|chr1 (55026064-55025600)
               

               
               453-915, gnl|Hg17|chr11 (118472434-118472919)
               

               
               453-915, gnl|Mm7|chr9 (44267937-44267466)

	742-915, + strand, RNAz p=0.998087
	780-924, - strand, RNAz p=0.987651

	2-127, gnl\|bosTau2\|chr15 (14285609-14285734)
	2-127, gnl\|canFam2\|chr5 (17772318-17772172)
	2-127, gnl\|dasNov1\|scaffold_3723 (82284-82425)
	2-127, gnl\|echTel1\|scaffold_303357 (41799-41677)
	2-127, gnl\|hg17\|chr11 (118471549-118471696)
	2-127, gnl\|Hg17\|chr11 (118471562-118471689)
	2-127, gnl\|mm7\|chr9 (44268879-44268733)
	2-127, gnl\|Mm7\|chr9 (44268864-44268738)
	2-127, gnl\|monDom2\|scaffold_2 (119499553-119499382)
	2-127, gnl\|oryCun1\|scaffold_136212 (1221-1076)
	2-127, gnl\|panTro1\|chr9_random (4698822-4698969)
	2-127, gnl\|rheMac2\|chr14 (117501829-117501976)
	2-127, gnl\|rn3\|chr8 (47321197-47321052)

	129-924, gnl\|bosTau2\|chr15 (14285840-14286654)
	129-924, gnl\|Hg17\|chr11 (118471790-118472928)
	129-924, gnl\|Mm7\|chr9 (44268369-44267457)

	453-915, gnl\|bosTau2\|chr1 (55026064-55025600)
	453-915, gnl\|Hg17\|chr11 (118472434-118472919)
	453-915, gnl\|Mm7\|chr9 (44267937-44267466)