Non-Coding RNA Search

Ss1.1-Pig2-96H19.5

Sequence:


               
               ATTACAAAGGAATTAAAAGGCTTTAGAATTAGCATAGAAGCAGTATCATCCAATAAAAGA
GATATTTCAAAACTTTAATCTTTTGCAATTACTTGCTATTAGATACTGCCTAAATAAACA
TTGTTTCTTGAATAAAAAGCTTTCTATGAATAGGTAGTTTATTATTTTACGTTTATTATG
ACTTTTATTATTTAATTTAAACTTGAATGTCATTTTTACATTTTTATGTGCTTTTTTCCC
CCTTCTTTTTTTTTGGGCGTGCGTGTTTCACAGCAGAATATGAATACCAGCTAACTGTGC
GCCCTGACCTGTTCACAAATAAACATACACAGTGGTTCTATTTCCAAGTCACTAATACCC
AAGCAGGAATAGTCTACAGATTCACTATTACCAATTTCACCAAGCCTGCTAGTCTTTATA
ATCGGGGTATGCGCCCACTATTTTATTCTGAAAAAGAGGCCAACGCTCATAATGTTGGCT
GGCAGAGAATAGGAGAACAAATCAAGTATTATAGAAACAACCAGGGGCAAGACGGGCGCC
ATTATTTCTCTCTTACGTGGACATTTCAATTTCCACACAATAAAGATACCTGCTACTTTG
CTCACTGCTATCCATACACTTACACCAACCTGCAAGAATACCTTTCTAGCATCAATAATG
ACCCAGTTCGGTCAAAGTTTTGTAAAATCCGTGTCTTGTGCCACACTCTGGCCAGGAACA
TGGTGTACGTTTTAACGATTGCCACCCCCTTGAAGAACAATGACTCAAGAAAGCGAAAGG
CCGTGATTTTGACTGCAAGGGTACATCCAGGAGAAACCAACAGCTCTTGGATCATGAAGG
GATTCCTAGATTATATTTTAGGAGACTCAAGTGATGCACAGTTGCTTCGGGACACTTTCA
TCTTCAAGGTGGTACCCATGCTGAATCCAGATGGTGTGATTGTAGGAAATTATCGGTGTT
CCTTAGCTGGACGGGATTTAAACCGTAACTATACATCTCTTCTGAAGGAATCATTTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACAAAGGAATTAAAAGGCTTTAGAATTAGCATAGAAGCAGTATCATCCAATAAAAGA
GATATTTCAAAACTTTAATCTTTTGCAATTACTTGCTATTAGATACTGCCTAAATAAACA
TTGTTTCTTGAATAAAAAGCTTTCTATGAATAGGTAGTTTATTATTTTACGTTTATTATG
ACTTTTATTATTTAATTTAAACTTGAATGTCATTTTTACATTTTTATGTGCTTTTTTCCC
CCTTCTTTTTTTTTGGGCGTGCGTGTTTCACAGCAGAATATGAATACCAGCTAACTGTGC
GCCCTGACCTGTTCACAAATAAACATACACAGTGGTTCTATTTCCAAGTCACTAATACCC
AAGCAGGAATAGTCTACAGATTCACTATTACCAATTTCACCAAGCCTGCTAGTCTTTATA
ATCGGGGTATGCGCCCACTATTTTATTCTGAAAAAGAGGCCAACGCTCATAATGTTGGCT
GGCAGAGAATAGGAGAACAAATCAAGTATTATAGAAACAACCAGGGGCAAGACGGGCGCC
ATTATTTCTCTCTTACGTGGACATTTCAATTTCCACACAATAAAGATACCTGCTACTTTG
CTCACTGCTATCCATACACTTACACCAACCTGCAAGAATACCTTTCTAGCATCAATAATG
ACCCAGTTCGGTCAAAGTTTTGTAAAATCCGTGTCTTGTGCCACACTCTGGCCAGGAACA
TGGTGTACGTTTTAACGATTGCCACCCCCTTGAAGAACAATGACTCAAGAAAGCGAAAGG
CCGTGATTTTGACTGCAAGGGTACATCCAGGAGAAACCAACAGCTCTTGGATCATGAAGG
GATTCCTAGATTATATTTTAGGAGACTCAAGTGATGCACAGTTGCTTCGGGACACTTTCA
TCTTCAAGGTGGTACCCATGCTGAATCCAGATGGTGTGATTGTAGGAAATTATCGGTGTT
CCTTAGCTGGACGGGATTTAAACCGTAACTATACATCTCTTCTGAAGGAATCATTTCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26338880|dbj|BAC33111.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26338880|dbj|BAC33111.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               744-903, - strand, RNAz p=0.775074

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               744-903, - strand, RNAz p=0.775074

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1020, gnl|bosTau2|chr4 (54136425-54137438)
               

               
               1-1020, gnl|Hg17|chr7 (134175924-134176903)
               

               
               1-1020, gnl|Mm7|chr6 (34730094-34731080)
               


               
               281-1018, gnl|bosTau2|chr15 (48681197-48681936)
               

               
               281-1018, gnl|Hg17|chr11 (47668977-47668238)
               

               
               281-1018, gnl|Mm7|chr2 (90651762-90652501)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr4 (54136425-54137438)
               

               
               1-1020, gnl|Hg17|chr7 (134175924-134176903)
               

               
               1-1020, gnl|Mm7|chr6 (34730094-34731080)
               


               
               281-1018, gnl|bosTau2|chr15 (48681197-48681936)
               

               
               281-1018, gnl|Hg17|chr11 (47668977-47668238)
               

               
               281-1018, gnl|Mm7|chr2 (90651762-90652501)

	1-1020, gnl\|bosTau2\|chr4 (54136425-54137438)
	1-1020, gnl\|Hg17\|chr7 (134175924-134176903)
	1-1020, gnl\|Mm7\|chr6 (34730094-34731080)

	281-1018, gnl\|bosTau2\|chr15 (48681197-48681936)
	281-1018, gnl\|Hg17\|chr11 (47668977-47668238)
	281-1018, gnl\|Mm7\|chr2 (90651762-90652501)