Non-Coding RNA Search

Ss1.1-Pig2-97A14.5

Sequence:


               
               GGCCCGCAAGCCCAGAGACTCTCTGTCCACAGTGTAAATGAGGACGCCACTGGCCCATGT
CCTGCAGGGATGTAGAGGGCAGCCTCAGAGGCACTGGGTGCTCCCAGCACCATGGATGAC
GCTGCCGTCCTCAAGCGACGAGGTTACATCATGGGAATAAATTTGGGAGAGGGCTCTTAT
GCCAAAGTCAAATCCGCTTACTCTGAGCGCCTCAAGTTCAACGTGGCGGTCAAGATCATC
GACCGCAAGAAAGCCCCCACGGACTTCCTAGAGAAATTCCTTCCCCGGGAAATTGAGATT
CTGGCCATGCTAAACCATCGCTCCATTGTCAAGACCTATGAGATCTTTGAAACATCAGAC
GGCAAGGTCTACATCGTCATGGAGCTTGGGGTCCAGGGCGACCTCCTTGAGTTCATCAAG
ACCCGGGGGGCCCTGCAGGAAGATGATGCTCGCAAGAAGTTCCACCAGCTCTCTTCAGCC
ATCAAGTATTGCCATGACATGGACATTGTCCACCGAGACCTCAAGTGCGAGAACCTCCTC
CTTGACAAGGACTTCAACATCAAGCTGTCTGACTTCGGCTTCTCCAAGCGCTGCCTGCGG
GATGACAGTGGCCGACTGACGCTGAGCAAGACCTTCTGCGGGTCAGCAGCCTATGCAGCC
CCCGAGGTGCTACAGGGCATCCCCTACCAGCCCAAGGTGTACGACATCTGGAGCCTGGGC
GTGATTCTCTACATCATGGTCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGCAAGCCCAGAGACTCTCTGTCCACAGTGTAAATGAGGACGCCACTGGCCCATGT
CCTGCAGGGATGTAGAGGGCAGCCTCAGAGGCACTGGGTGCTCCCAGCACCATGGATGAC
GCTGCCGTCCTCAAGCGACGAGGTTACATCATGGGAATAAATTTGGGAGAGGGCTCTTAT
GCCAAAGTCAAATCCGCTTACTCTGAGCGCCTCAAGTTCAACGTGGCGGTCAAGATCATC
GACCGCAAGAAAGCCCCCACGGACTTCCTAGAGAAATTCCTTCCCCGGGAAATTGAGATT
CTGGCCATGCTAAACCATCGCTCCATTGTCAAGACCTATGAGATCTTTGAAACATCAGAC
GGCAAGGTCTACATCGTCATGGAGCTTGGGGTCCAGGGCGACCTCCTTGAGTTCATCAAG
ACCCGGGGGGCCCTGCAGGAAGATGATGCTCGCAAGAAGTTCCACCAGCTCTCTTCAGCC
ATCAAGTATTGCCATGACATGGACATTGTCCACCGAGACCTCAAGTGCGAGAACCTCCTC
CTTGACAAGGACTTCAACATCAAGCTGTCTGACTTCGGCTTCTCCAAGCGCTGCCTGCGG
GATGACAGTGGCCGACTGACGCTGAGCAAGACCTTCTGCGGGTCAGCAGCCTATGCAGCC
CCCGAGGTGCTACAGGGCATCCCCTACCAGCCCAAGGTGTACGACATCTGGAGCCTGGGC
GTGATTCTCTACATCATGGTCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61855428|ref|XP_607635.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61855428|ref|XP_607635.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               38-157, + strand, RNAz p=0.762529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-157, + strand, RNAz p=0.762529

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-744, gnl|bosTau2|chr17 (44421641-44420899)
               

               
               1-744, gnl|Mm7|chr16 (17443973-17444718)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr17 (44421641-44420899)
               

               
               1-744, gnl|Mm7|chr16 (17443973-17444718)

	1-744, gnl\|bosTau2\|chr17 (44421641-44420899)
	1-744, gnl\|Mm7\|chr16 (17443973-17444718)