Non-Coding RNA Search

Ss1.1-Pig2-97K09.5

Sequence:


               
               GGCTCTCCTGGTACTGAGACACCTATCAGGATGGGGATGCTCACTGGGCCTGGTCCACTG
GGAATGCCCCTCCAATTTGGAGAGAGGACACTGAGCCATGCCCATGATCCTAGCTGGTCC
CAACCCGTTGCTGAAAAAAATGAGGCTAGTCACACCATCTGGATGCTGGAGACCCCCAAG
GTGCAGGACACCTCTATGGTCCAGGCCAAGAAACAGCAGTGGGCAAACTCAGAGCAGGCC
CCAGAGTCTGTACCATCAGCCAAAATCCAGGAGGTGCCCAGACCTGTGCTCCAGGAGGAT
ATAGGCCACCACACTCAGAAAGGGGTCATTAGCTCTCACTCTGACAACCCTCAGGTCAAA
GGCACTGGGAAGGCCCCCCTTGCTTGTCAGCCCCCACTAGCTGAGCAGTATCCCTTCTCC
AGACAGCCCCCTTCAACCGGTCAGCCTCCCTCCACAGAGCAGTGTCTCCACACCAGGAAG
ACCCACCTTTCTGGACAGCCACCCTTAGCTGAGCCAGCCCCCTCTGCCAAGCAGCCCCCT
CTTCCTGATCAGCCCCATTTCATTGGGACCCCTATGTCCAGGCAGCTTTCTTTCACTGGG
AAGCCTCCCCTCTCCCAAAAACATCCCATCCCCAACGAGCCCACCTTCTCAAGAGGGCTC
CCCACCGCTAGGGACCCTGGTCAAGCCTCCACCCTGTGCCAGGAAGGTGAGGCTTCAGGC
CCGTCTACCCGGTCGGCAGTACATCAGGTGCCCCTGGCCCCTGAAGAGACTTGTGTCTAT
GCAAACAGAGAAAAGGTTGGTGCTAGTGCTGCTCAAAGCTCCAGCACACATCAGCTCGCA
TCCTGGCAGCCTGGCAGCTCCCCCAGGGTGCAGGAGGAGCAGCTTTCCTTGATCACATTC
ACTACACCCAGTGTTGGTTGCAAGGTCTTGCCCATGGCCATGGTGGGCAATGAGCCCCAG
GGCCCCCGGTTCAAGCTGACAGCTGAGGACATTACACACTCGCCAGTGGTCACCCACCTT
GGCCTGCTCCAGGGGGCCTGCTATGAGCTGGTCCCAACCGTGGATGCTCTACCGGTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTCCTGGTACTGAGACACCTATCAGGATGGGGATGCTCACTGGGCCTGGTCCACTG
GGAATGCCCCTCCAATTTGGAGAGAGGACACTGAGCCATGCCCATGATCCTAGCTGGTCC
CAACCCGTTGCTGAAAAAAATGAGGCTAGTCACACCATCTGGATGCTGGAGACCCCCAAG
GTGCAGGACACCTCTATGGTCCAGGCCAAGAAACAGCAGTGGGCAAACTCAGAGCAGGCC
CCAGAGTCTGTACCATCAGCCAAAATCCAGGAGGTGCCCAGACCTGTGCTCCAGGAGGAT
ATAGGCCACCACACTCAGAAAGGGGTCATTAGCTCTCACTCTGACAACCCTCAGGTCAAA
GGCACTGGGAAGGCCCCCCTTGCTTGTCAGCCCCCACTAGCTGAGCAGTATCCCTTCTCC
AGACAGCCCCCTTCAACCGGTCAGCCTCCCTCCACAGAGCAGTGTCTCCACACCAGGAAG
ACCCACCTTTCTGGACAGCCACCCTTAGCTGAGCCAGCCCCCTCTGCCAAGCAGCCCCCT
CTTCCTGATCAGCCCCATTTCATTGGGACCCCTATGTCCAGGCAGCTTTCTTTCACTGGG
AAGCCTCCCCTCTCCCAAAAACATCCCATCCCCAACGAGCCCACCTTCTCAAGAGGGCTC
CCCACCGCTAGGGACCCTGGTCAAGCCTCCACCCTGTGCCAGGAAGGTGAGGCTTCAGGC
CCGTCTACCCGGTCGGCAGTACATCAGGTGCCCCTGGCCCCTGAAGAGACTTGTGTCTAT
GCAAACAGAGAAAAGGTTGGTGCTAGTGCTGCTCAAAGCTCCAGCACACATCAGCTCGCA
TCCTGGCAGCCTGGCAGCTCCCCCAGGGTGCAGGAGGAGCAGCTTTCCTTGATCACATTC
ACTACACCCAGTGTTGGTTGCAAGGTCTTGCCCATGGCCATGGTGGGCAATGAGCCCCAG
GGCCCCCGGTTCAAGCTGACAGCTGAGGACATTACACACTCGCCAGTGGTCACCCACCTT
GGCCTGCTCCAGGGGGCCTGCTATGAGCTGGTCCCAACCGTGGATGCTCTACCGGTACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-521, - strand, RNAz p=0.973529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-521, - strand, RNAz p=0.973529

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               275-408, - strand, RNAmicro p=0.999537

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               275-408, - strand, RNAmicro p=0.999537

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-540, gnl|bosTau2|chr22 (38197108-38196579)
               

               
               1-540, gnl|canFam2|chr20 (42411696-42410957)
               

               
               1-540, gnl|dasNov1|scaffold_8553 (66658-65951)
               

               
               1-540, gnl|echTel1|scaffold_309710 (40902-40172)
               

               
               1-540, gnl|hg17|chr3 (49887228-49887838)
               

               
               1-540, gnl|Hg17|chr3 (49887808-49887279)
               

               
               1-540, gnl|mm7|chr9 (107662316-107661691)
               

               
               1-540, gnl|Mm7|chr9 (107661719-107662269)
               

               
               1-540, gnl|oryCun1|scaffold_191234 (93214-93878)
               

               
               1-540, gnl|panTro1|chr2 (51465084-51465694)
               

               
               1-540, gnl|rheMac2|chr2 (86532241-86531634)
               

               
               1-540, gnl|rn3|chr8 (113219563-113218935)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr22 (38197108-38196579)
               

               
               1-540, gnl|canFam2|chr20 (42411696-42410957)
               

               
               1-540, gnl|dasNov1|scaffold_8553 (66658-65951)
               

               
               1-540, gnl|echTel1|scaffold_309710 (40902-40172)
               

               
               1-540, gnl|hg17|chr3 (49887228-49887838)
               

               
               1-540, gnl|Hg17|chr3 (49887808-49887279)
               

               
               1-540, gnl|mm7|chr9 (107662316-107661691)
               

               
               1-540, gnl|Mm7|chr9 (107661719-107662269)
               

               
               1-540, gnl|oryCun1|scaffold_191234 (93214-93878)
               

               
               1-540, gnl|panTro1|chr2 (51465084-51465694)
               

               
               1-540, gnl|rheMac2|chr2 (86532241-86531634)
               

               
               1-540, gnl|rn3|chr8 (113219563-113218935)

	1-540, gnl\|bosTau2\|chr22 (38197108-38196579)
	1-540, gnl\|canFam2\|chr20 (42411696-42410957)
	1-540, gnl\|dasNov1\|scaffold_8553 (66658-65951)
	1-540, gnl\|echTel1\|scaffold_309710 (40902-40172)
	1-540, gnl\|hg17\|chr3 (49887228-49887838)
	1-540, gnl\|Hg17\|chr3 (49887808-49887279)
	1-540, gnl\|mm7\|chr9 (107662316-107661691)
	1-540, gnl\|Mm7\|chr9 (107661719-107662269)
	1-540, gnl\|oryCun1\|scaffold_191234 (93214-93878)
	1-540, gnl\|panTro1\|chr2 (51465084-51465694)
	1-540, gnl\|rheMac2\|chr2 (86532241-86531634)
	1-540, gnl\|rn3\|chr8 (113219563-113218935)