Non-Coding RNA Search

Ss1.1-Pig2-98G18.5

Sequence:


               
               ACAACCTGTGCTTTCTTCTCATCCTGCTGTATTTATGTTCCTTGAGCCATCTCTTCGACT
CCCATGGCTTTAATGATCATCTACTTGTATGTCAGAGATTACAAAATAAAATCTAAATCT
TTGGCCCTTCCTTTTCTCCCAAACTGTAGATATGTTTCCATCTTGCTGTCTTATACTTTC
ACTGAAGATCCACAAACATAGTATTGAAATAAACGCTTATTCTAGAGAGAGACTACCTAG
ATTCAAATTTCCCTGATCCACCCTGCCCCTTTTTGCCTTACCCACTTTGATTTCTTCATA
CTCAGAAATCTTTTTTGGGGGGGGTCTTTTGCCTTTTCTAGAGCTGCACCTGGGAACCTC
CATATACTGCGGAAGCGGCCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACCTGTGCTTTCTTCTCATCCTGCTGTATTTATGTTCCTTGAGCCATCTCTTCGACT
CCCATGGCTTTAATGATCATCTACTTGTATGTCAGAGATTACAAAATAAAATCTAAATCT
TTGGCCCTTCCTTTTCTCCCAAACTGTAGATATGTTTCCATCTTGCTGTCTTATACTTTC
ACTGAAGATCCACAAACATAGTATTGAAATAAACGCTTATTCTAGAGAGAGACTACCTAG
ATTCAAATTTCCCTGATCCACCCTGCCCCTTTTTGCCTTACCCACTTTGATTTCTTCATA
CTCAGAAATCTTTTTTGGGGGGGGTCTTTTGCCTTTTCTAGAGCTGCACCTGGGAACCTC
CATATACTGCGGAAGCGGCCCAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-142, + strand, RNAz p=0.794529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-142, + strand, RNAz p=0.794529

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-191, gnl|bosTau2|chr12 (30345114-30345307)
               

               
               3-191, gnl|canFam2|chr22 (34969576-34969754)
               

               
               3-191, gnl|echTel1|scaffold_283022 (65578-65762)
               

               
               3-191, gnl|hg17|chr13 (78100969-78101173)
               

               
               3-191, gnl|Hg17|chr13 (78101185-78100979)
               

               
               3-191, gnl|loxAfr1|scaffold_10064 (25987-26163)
               

               
               3-191, gnl|oryCun1|scaffold_203949 (54455-54292)
               

               
               3-191, gnl|panTro1|chr14 (60746484-60746688)
               

               
               3-191, gnl|rheMac2|chr17 (59121282-59121486)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-191, gnl|bosTau2|chr12 (30345114-30345307)
               

               
               3-191, gnl|canFam2|chr22 (34969576-34969754)
               

               
               3-191, gnl|echTel1|scaffold_283022 (65578-65762)
               

               
               3-191, gnl|hg17|chr13 (78100969-78101173)
               

               
               3-191, gnl|Hg17|chr13 (78101185-78100979)
               

               
               3-191, gnl|loxAfr1|scaffold_10064 (25987-26163)
               

               
               3-191, gnl|oryCun1|scaffold_203949 (54455-54292)
               

               
               3-191, gnl|panTro1|chr14 (60746484-60746688)
               

               
               3-191, gnl|rheMac2|chr17 (59121282-59121486)

	3-191, gnl\|bosTau2\|chr12 (30345114-30345307)
	3-191, gnl\|canFam2\|chr22 (34969576-34969754)
	3-191, gnl\|echTel1\|scaffold_283022 (65578-65762)
	3-191, gnl\|hg17\|chr13 (78100969-78101173)
	3-191, gnl\|Hg17\|chr13 (78101185-78100979)
	3-191, gnl\|loxAfr1\|scaffold_10064 (25987-26163)
	3-191, gnl\|oryCun1\|scaffold_203949 (54455-54292)
	3-191, gnl\|panTro1\|chr14 (60746484-60746688)
	3-191, gnl\|rheMac2\|chr17 (59121282-59121486)