Non-Coding RNA Search

Ss1.1-Pig2-98K10.5

Sequence:


               
               CCCGGCTATCTCCCCGCTCCCAGTCCGCGGGGGGCACATGATGCGTGGGGCGACCTTTGC
CTACGTGCCCAGCCCGCAGGTCCTGCACAGGATCCCAGGGACCTCAGCCTATGCCTTCCC
CAGCCTGGGCCCTGTGGCCCTCACCGAGCACGGCTGCTCCTATGGGGAGGTTCTGGAGCG
CCATGACCCGCTGCCCTCCAAGCTGGCCCTGGAGGAGGAACAGAAGCCGAGCCAGGGTTG
GCCCAGAAGCTGCGCCAGGCTGGCTCAATGCTCCTCAAGGTGCCGCTGATGCTTGCCTTC
CTCTACCTCTTTGTCTGCTCCCTGGACGTGCTCAGCTCAGCCTTCCAGCTGGCTGGAGGA
AAGGTGGCTGGCGACATCTTCAAGGACAACGCCATCCTGTCCAACCCAGTAGCAGGGCTG
GTGGTGGGGATCCTAGTGACCGTGCTGGTGCAGAGCTCCAGCACCTCCACATCCATCATT
GTCAGCATGGTCTCCTCTGGCTTGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGC
TCCAACATCGGCACCTCGGTCACCAACACCATCGTGGGCCCTGATGCAAGCGGGGGACAG
GACTGACTTCCGGCGGGCCTTCGCGGGGGCCACCGTGCACGACTGTTTTAACTGGCTCTC
AGTTGTGGTCCTGCTGCCCCTGGAAGCTGCCACCGGGTACCTGCACTACGTCACTCGACT
TGTGGTAGCCTCCTTCAACATCCGTGGTGGCCGTGACACCCCTGACCTGCTCAAGATCAT
CACGGAGCCTTTCACTAAGCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGCTATCTCCCCGCTCCCAGTCCGCGGGGGGCACATGATGCGTGGGGCGACCTTTGC
CTACGTGCCCAGCCCGCAGGTCCTGCACAGGATCCCAGGGACCTCAGCCTATGCCTTCCC
CAGCCTGGGCCCTGTGGCCCTCACCGAGCACGGCTGCTCCTATGGGGAGGTTCTGGAGCG
CCATGACCCGCTGCCCTCCAAGCTGGCCCTGGAGGAGGAACAGAAGCCGAGCCAGGGTTG
GCCCAGAAGCTGCGCCAGGCTGGCTCAATGCTCCTCAAGGTGCCGCTGATGCTTGCCTTC
CTCTACCTCTTTGTCTGCTCCCTGGACGTGCTCAGCTCAGCCTTCCAGCTGGCTGGAGGA
AAGGTGGCTGGCGACATCTTCAAGGACAACGCCATCCTGTCCAACCCAGTAGCAGGGCTG
GTGGTGGGGATCCTAGTGACCGTGCTGGTGCAGAGCTCCAGCACCTCCACATCCATCATT
GTCAGCATGGTCTCCTCTGGCTTGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGC
TCCAACATCGGCACCTCGGTCACCAACACCATCGTGGGCCCTGATGCAAGCGGGGGACAG
GACTGACTTCCGGCGGGCCTTCGCGGGGGCCACCGTGCACGACTGTTTTAACTGGCTCTC
AGTTGTGGTCCTGCTGCCCCTGGAAGCTGCCACCGGGTACCTGCACTACGTCACTCGACT
TGTGGTAGCCTCCTTCAACATCCGTGGTGGCCGTGACACCCCTGACCTGCTCAAGATCAT
CACGGAGCCTTTCACTAAGCTCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9Z323_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9Z323_RAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               383-502, - strand, RNAz p=0.643715
               

               
               615-733, + strand, RNAz p=0.658269

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-502, - strand, RNAz p=0.643715
               

               
               615-733, + strand, RNAz p=0.658269

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               653-773, + strand, RNAmicro p=0.989074

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               653-773, + strand, RNAmicro p=0.989074

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               80-228, gnl|bosTau2|chr7 (21629452-21629600)
               

               
               80-228, gnl|Hg17|chr5 (176745593-176745741)
               

               
               80-228, gnl|Mm7|chr13 (54481532-54481680)
               


               
               357-502, gnl|bosTau2|chr7 (21629885-21630030)
               

               
               357-502, gnl|Hg17|chr5 (176746028-176746173)
               

               
               357-502, gnl|Mm7|chr13 (54481970-54482115)
               


               
               615-804, gnl|bosTau2|chr7 (21631188-21631377)
               

               
               615-804, gnl|Hg17|chr5 (176747600-176747789)
               

               
               615-804, gnl|Mm7|chr13 (54483749-54483938)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-228, gnl|bosTau2|chr7 (21629452-21629600)
               

               
               80-228, gnl|Hg17|chr5 (176745593-176745741)
               

               
               80-228, gnl|Mm7|chr13 (54481532-54481680)
               


               
               357-502, gnl|bosTau2|chr7 (21629885-21630030)
               

               
               357-502, gnl|Hg17|chr5 (176746028-176746173)
               

               
               357-502, gnl|Mm7|chr13 (54481970-54482115)
               


               
               615-804, gnl|bosTau2|chr7 (21631188-21631377)
               

               
               615-804, gnl|Hg17|chr5 (176747600-176747789)
               

               
               615-804, gnl|Mm7|chr13 (54483749-54483938)

	383-502, - strand, RNAz p=0.643715
	615-733, + strand, RNAz p=0.658269

	80-228, gnl\|bosTau2\|chr7 (21629452-21629600)
	80-228, gnl\|Hg17\|chr5 (176745593-176745741)
	80-228, gnl\|Mm7\|chr13 (54481532-54481680)

	357-502, gnl\|bosTau2\|chr7 (21629885-21630030)
	357-502, gnl\|Hg17\|chr5 (176746028-176746173)
	357-502, gnl\|Mm7\|chr13 (54481970-54482115)

	615-804, gnl\|bosTau2\|chr7 (21631188-21631377)
	615-804, gnl\|Hg17\|chr5 (176747600-176747789)
	615-804, gnl\|Mm7\|chr13 (54483749-54483938)