Ss1.1-Pig3-SRG8001C15.3
|
GCGATGTCGGTCACACCTCCCCCACGATCTGCCATCCTAACCAGCATGAAAAAGAAACTC
CATACTCTGAGCCAGATTGAAACTTCAATTGCAACAGTTCAAGAGAAACTGGCAGCTCTT
GAAGCAAGTATTGAACAGCGACTCAAGTGGGCAGGTGGTGCCAACCCTGCACTGGCACCA
GGGCTACAAGATTTTGAAGCAACAATAGCTGAAAGAAGAAATCTTGTCCTTAAAGAGAGC
CAAAGAGCCAGTCAGGTCACTTTCCTCTGCAGCAATATTATTCATTTTGAAAGTTTACGA
ACTAGAACTGCGGAAGCCTTAAACCTGGATGCTGCATTATTTGAGCTAATCAAACGGTGT
CAGCAAATGTGTTCATTTGCTTCACAGTTTAACAGTTCAGTCTCTGAGTTAGAGCTTCGT
TTATTACAGAGAGTGGACACAAGCCTTGAACACCCTATTGGCAGCTCTGAATGGCTTTTA
TCAGCACACAAACAGTTGACCCAGGATATGTCTACGCAGAGAGCAATTCAGACGGAGAAA
GAGCAGCAGATAGAAACGGTCTGTGAAACAATTCAGAATCTGGTTGATAATATAAAGACT
GTGCTCACAGGTCATAACCGGCAGCTTGGAGATGTCAAACATCTCCTGAAAGCAATGGCC
AAGGATGAAGAAGCTGCTCTGGCACGCAGTCCCTCCCCCCTTCATGAAATTACTCATGGC
TTTACTCAGGAGGGAAAACAAATTTCTCTCAGGTCATGTCTTACCATTTGTAACTGAGTT
AATTTGTGTTTTCATCAGTTATTTTTTTTGAGCAGGGAGTAATTAAGTATTCTGATTTGT
ACACAGAGAAACTGGGACTTAGAGAAATTTTCATCCAAAGTCACAGCTTATAAAAGAGCT
GAAACTTAGTCTCAAGAGTGTTTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGATGTCGGTCACACCTCCCCCACGATCTGCCATCCTAACCAGCATGAAAAAGAAACTC
CATACTCTGAGCCAGATTGAAACTTCAATTGCAACAGTTCAAGAGAAACTGGCAGCTCTT
GAAGCAAGTATTGAACAGCGACTCAAGTGGGCAGGTGGTGCCAACCCTGCACTGGCACCA
GGGCTACAAGATTTTGAAGCAACAATAGCTGAAAGAAGAAATCTTGTCCTTAAAGAGAGC
CAAAGAGCCAGTCAGGTCACTTTCCTCTGCAGCAATATTATTCATTTTGAAAGTTTACGA
ACTAGAACTGCGGAAGCCTTAAACCTGGATGCTGCATTATTTGAGCTAATCAAACGGTGT
CAGCAAATGTGTTCATTTGCTTCACAGTTTAACAGTTCAGTCTCTGAGTTAGAGCTTCGT
TTATTACAGAGAGTGGACACAAGCCTTGAACACCCTATTGGCAGCTCTGAATGGCTTTTA
TCAGCACACAAACAGTTGACCCAGGATATGTCTACGCAGAGAGCAATTCAGACGGAGAAA
GAGCAGCAGATAGAAACGGTCTGTGAAACAATTCAGAATCTGGTTGATAATATAAAGACT
GTGCTCACAGGTCATAACCGGCAGCTTGGAGATGTCAAACATCTCCTGAAAGCAATGGCC
AAGGATGAAGAAGCTGCTCTGGCACGCAGTCCCTCCCCCCTTCATGAAATTACTCATGGC
TTTACTCAGGAGGGAAAACAAATTTCTCTCAGGTCATGTCTTACCATTTGTAACTGAGTT
AATTTGTGTTTTCATCAGTTATTTTTTTTGAGCAGGGAGTAATTAAGTATTCTGATTTGT
ACACAGAGAAACTGGGACTTAGAGAAATTTTCATCCAAAGTCACAGCTTATAAAAGAGCT
GAAACTTAGTCTCAAGAGTGTTTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
103-257, gnl|bosTau2|chr25 (11776540-11776694) |
|
103-257, gnl|canFam2|chr6 (29323834-29323615) |
|
103-257, gnl|danRer3|chr3 (26317197-26317374) |
|
103-257, gnl|dasNov1|scaffold_12791 (32843-33072) |
|
103-257, gnl|echTel1|scaffold_213432 (2058-2287) |
|
103-257, gnl|fr1|chrUn (270968425-270968607) |
|
103-257, gnl|galGal2|chr14 (10504111-10504331) |
|
103-257, gnl|hg17|chr16 (18738292-18738519) |
|
103-257, gnl|Hg17|chr16 (18738477-18738323) |
|
103-257, gnl|loxAfr1|scaffold_613 (23488-23715) |
|
103-257, gnl|mm7|chr7 (114064290-114064485) |
|
103-257, gnl|Mm7|chr7 (114064445-114064291) |
|
103-257, gnl|monDom2|scaffold_19 (38843690-38843874) |
|
103-257, gnl|oryCun1|scaffold_210353 (61068-61295) |
|
103-257, gnl|panTro1|chr18 (19196539-19196766) |
|
103-257, gnl|rheMac2|chr20 (17811187-17811414) |
|
103-257, gnl|rn3|chr1 (176494222-176494439) |
|
103-257, gnl|tetNig1|chr3_random (31594-31757) |
|
103-257, gnl|xenTro1|scaffold_214 (1497833-1497637) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
103-257, gnl|bosTau2|chr25 (11776540-11776694) |
|
103-257, gnl|canFam2|chr6 (29323834-29323615) |
|
103-257, gnl|danRer3|chr3 (26317197-26317374) |
|
103-257, gnl|dasNov1|scaffold_12791 (32843-33072) |
|
103-257, gnl|echTel1|scaffold_213432 (2058-2287) |
|
103-257, gnl|fr1|chrUn (270968425-270968607) |
|
103-257, gnl|galGal2|chr14 (10504111-10504331) |
|
103-257, gnl|hg17|chr16 (18738292-18738519) |
|
103-257, gnl|Hg17|chr16 (18738477-18738323) |
|
103-257, gnl|loxAfr1|scaffold_613 (23488-23715) |
|
103-257, gnl|mm7|chr7 (114064290-114064485) |
|
103-257, gnl|Mm7|chr7 (114064445-114064291) |
|
103-257, gnl|monDom2|scaffold_19 (38843690-38843874) |
|
103-257, gnl|oryCun1|scaffold_210353 (61068-61295) |
|
103-257, gnl|panTro1|chr18 (19196539-19196766) |
|
103-257, gnl|rheMac2|chr20 (17811187-17811414) |
|
103-257, gnl|rn3|chr1 (176494222-176494439) |
|
103-257, gnl|tetNig1|chr3_random (31594-31757) |
|
103-257, gnl|xenTro1|scaffold_214 (1497833-1497637) |
