Non-Coding RNA Search

Ss1.1-Pig3-SRG8001F05.3

Sequence:


               
               CCGACTGCGAATGGAAGAGGAGGCAGCCAGACTCCGGCACGAGGAGGAGGAACGGAAGAG
GAAAGAGCTAGAGCTCCAGCGGCAGAAGGAGTTAATGCGCCAGAGGCAGCAGCAGCAGGA
GGCTCTCCGGAGGTTGCAGCAGCAGCAGCAGCAGCAGCAGCTGGCTCAGATGAAGCTTCC
CTCCTCTTCAACGTGGGGCCAGCAATCCAATACGACAGCCTGTCCGTCCCATGCGACGCT
GTCGTTGGCTGAAATCCAAAAACTAGAAGAGGAACGAGAACGACAACTTCGAGAGGAGCA
AAGGCGCCAGCAGAGGGAACTGATGAAAGCTCTCCAGCAGCAGCAGCAGCAGCAGCAGCA
GAAACTCTCAGGTTGGGGGAATGTCAGCAAACCCGCAGGTACTGCAAAGTCTCTCCTGGA
GATACAGCAGGAAGAAGCCAGGCAGATGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACCAAACAGAGCCCGGAATAACACGCATTCCAACCTGCACACCAGCATTGGGAACTCTGT
TTGGGGCTCTATAAATACTGGTCCCCCTAACCAGTGGGCATCGGATCTAGTCAGTAGTAT
CTGGAGTAATGCTGATACTAAGAACTCTAACATGGGATTTTGGGATGATGCAGTGAAAGA
AGTGGGACCTAGGAATTCAACAAATAAGAATAAAAACAACGCCAGTCTCAGTAAATCTGT
AGGTGTGTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACTGCGAATGGAAGAGGAGGCAGCCAGACTCCGGCACGAGGAGGAGGAACGGAAGAG
GAAAGAGCTAGAGCTCCAGCGGCAGAAGGAGTTAATGCGCCAGAGGCAGCAGCAGCAGGA
GGCTCTCCGGAGGTTGCAGCAGCAGCAGCAGCAGCAGCAGCTGGCTCAGATGAAGCTTCC
CTCCTCTTCAACGTGGGGCCAGCAATCCAATACGACAGCCTGTCCGTCCCATGCGACGCT
GTCGTTGGCTGAAATCCAAAAACTAGAAGAGGAACGAGAACGACAACTTCGAGAGGAGCA
AAGGCGCCAGCAGAGGGAACTGATGAAAGCTCTCCAGCAGCAGCAGCAGCAGCAGCAGCA
GAAACTCTCAGGTTGGGGGAATGTCAGCAAACCCGCAGGTACTGCAAAGTCTCTCCTGGA
GATACAGCAGGAAGAAGCCAGGCAGATGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACCAAACAGAGCCCGGAATAACACGCATTCCAACCTGCACACCAGCATTGGGAACTCTGT
TTGGGGCTCTATAAATACTGGTCCCCCTAACCAGTGGGCATCGGATCTAGTCAGTAGTAT
CTGGAGTAATGCTGATACTAAGAACTCTAACATGGGATTTTGGGATGATGCAGTGAAAGA
AGTGGGACCTAGGAATTCAACAAATAAGAATAAAAACAACGCCAGTCTCAGTAAATCTGT
AGGTGTGTCTAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7Z6I7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z6I7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               58-175, - strand, RNAz p=0.977237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-175, - strand, RNAz p=0.977237

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-175, gnl|bosTau2|chr3 (78628432-78628258)
               

               
               1-175, gnl|Hg17|chr2 (233523134-233523308)
               

               
               1-175, gnl|Mm7|chr1 (87334417-87334591)
               


               
               297-505, gnl|bosTau2|chr3 (78618563-78618352)
               

               
               297-505, gnl|Hg17|chr2 (233534259-233534470)
               

               
               297-505, gnl|Mm7|chr1 (87341291-87341517)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr3 (78628432-78628258)
               

               
               1-175, gnl|Hg17|chr2 (233523134-233523308)
               

               
               1-175, gnl|Mm7|chr1 (87334417-87334591)
               


               
               297-505, gnl|bosTau2|chr3 (78618563-78618352)
               

               
               297-505, gnl|Hg17|chr2 (233534259-233534470)
               

               
               297-505, gnl|Mm7|chr1 (87341291-87341517)

	1-175, gnl\|bosTau2\|chr3 (78628432-78628258)
	1-175, gnl\|Hg17\|chr2 (233523134-233523308)
	1-175, gnl\|Mm7\|chr1 (87334417-87334591)

	297-505, gnl\|bosTau2\|chr3 (78618563-78618352)
	297-505, gnl\|Hg17\|chr2 (233534259-233534470)
	297-505, gnl\|Mm7\|chr1 (87341291-87341517)