Non-Coding RNA Search

Ss1.1-Pig3-SRG8001N05.3

Sequence:


               
               GACACAGTGTGGCCTTTATAACATAAAGGAGGGAAGAGGCATGTATTCGACATGGTATTT
TGCCCTTTCTTTGTGTTGTAATTGAGGGTAGCCTTCTAAATTTGGTTTGGCAGGTGCAGC
CAGTGGTCCGACTCTGGACTCCATTATAGAAACTTCCTTTTCACCCCGTCTTCTTTCTGG
TGGAGAACAAAGGTGGGTTGAGGAATAAAGTTGGAGAGCTAGGCTGGCTTCCGTCCTGCA
GAATTGGGTGTGTCTTTTTTCACGTTGGACTTTGGGAAGGTGCTCAAGTGAGATCAGTCT
CATGGTCTCTGAAGGGAAGGGTCATGTGCTGTCCTTCCTGTGAAAGCCCATATCATTTGT
GAGAATGGTTCTGGGAGAAGCCATGGAGCTAGAGGATACTGAAAACAATGAAATTGTGAT
TGGGGATTTTTAGGACATTATATTTTAAATTATATTATGAATGTAAGACTTGCTTTTTTA
TCTGTATATCTGAAGGAAACAGCTGCATCCGCAATTTCTGCAGCCTATATGACTTCAGAG
ATTGGAGCTTATGGATTTAACAGTACTGGTGCCATGAGGGTGAGCAGGCGAGCCTGCAGA
TACTGTTATGTTTAGATTGGCCCTCTTTGGTGGCTTTAGCTTCTCGGCAGAAGTTCTTTG
GGAGATCTCCAAGCTTGCTTTAGAAAAATGATCAGGAGCCCTGTTCTTATGAGTGCTGGA
TTATCCCAAACTATAGGAGTGAACATTTTTGTTGAGAAAGGAAATCTTTCTAAGCCAAGT
TGTCCAGCTGAAAAATGCCAAATAGCTACGGATCATTTAATGTGATGTTCTTTGGTCTTT
ATGGCATTTTTTTTTTGCCACGGAAAAGGTGATGCAATTTGAATTTGTTTTCTTGTTTTT
AATGCAGCTTCCTTCACACTAAATAGTCTTTATGGATAAATTAAAGTTGTGTCATTGGAA
GTCACAGGGAGGGAGGAGTTGTGCCTGTGCGCTGCTGCTTGCCAGGACCAGGTTGGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACAGTGTGGCCTTTATAACATAAAGGAGGGAAGAGGCATGTATTCGACATGGTATTT
TGCCCTTTCTTTGTGTTGTAATTGAGGGTAGCCTTCTAAATTTGGTTTGGCAGGTGCAGC
CAGTGGTCCGACTCTGGACTCCATTATAGAAACTTCCTTTTCACCCCGTCTTCTTTCTGG
TGGAGAACAAAGGTGGGTTGAGGAATAAAGTTGGAGAGCTAGGCTGGCTTCCGTCCTGCA
GAATTGGGTGTGTCTTTTTTCACGTTGGACTTTGGGAAGGTGCTCAAGTGAGATCAGTCT
CATGGTCTCTGAAGGGAAGGGTCATGTGCTGTCCTTCCTGTGAAAGCCCATATCATTTGT
GAGAATGGTTCTGGGAGAAGCCATGGAGCTAGAGGATACTGAAAACAATGAAATTGTGAT
TGGGGATTTTTAGGACATTATATTTTAAATTATATTATGAATGTAAGACTTGCTTTTTTA
TCTGTATATCTGAAGGAAACAGCTGCATCCGCAATTTCTGCAGCCTATATGACTTCAGAG
ATTGGAGCTTATGGATTTAACAGTACTGGTGCCATGAGGGTGAGCAGGCGAGCCTGCAGA
TACTGTTATGTTTAGATTGGCCCTCTTTGGTGGCTTTAGCTTCTCGGCAGAAGTTCTTTG
GGAGATCTCCAAGCTTGCTTTAGAAAAATGATCAGGAGCCCTGTTCTTATGAGTGCTGGA
TTATCCCAAACTATAGGAGTGAACATTTTTGTTGAGAAAGGAAATCTTTCTAAGCCAAGT
TGTCCAGCTGAAAAATGCCAAATAGCTACGGATCATTTAATGTGATGTTCTTTGGTCTTT
ATGGCATTTTTTTTTTGCCACGGAAAAGGTGATGCAATTTGAATTTGTTTTCTTGTTTTT
AATGCAGCTTCCTTCACACTAAATAGTCTTTATGGATAAATTAAAGTTGTGTCATTGGAA
GTCACAGGGAGGGAGGAGTTGTGCCTGTGCGCTGCTGCTTGCCAGGACCAGGTTGGGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-115, + strand, RNAz p=0.523263

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-115, + strand, RNAz p=0.523263

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1018, gnl|bosTau2|chr5 (26429211-26430240)
               

               
               2-1018, gnl|Hg17|chr12 (47372337-47371324)
               

               
               2-1018, gnl|Mm7|chr15 (98528361-98527412)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1018, gnl|bosTau2|chr5 (26429211-26430240)
               

               
               2-1018, gnl|Hg17|chr12 (47372337-47371324)
               

               
               2-1018, gnl|Mm7|chr15 (98528361-98527412)

	2-1018, gnl\|bosTau2\|chr5 (26429211-26430240)
	2-1018, gnl\|Hg17\|chr12 (47372337-47371324)
	2-1018, gnl\|Mm7\|chr15 (98528361-98527412)