Non-Coding RNA Search

Ss1.1-Pig3-SRG8001O14.3

Sequence:


               
               CTCAAATCTCATTTATAACCGTGTGCTGAAAACCTGGATTGGTGACTGCCATCCTAGGCC
GATGTGCTGGCCCAGGGGAAGGAAACTGAGCGAGTAGAAGTCCCTACCATAAAGGGTTGG
GTTTGGAGAGGGGCATCCAGGGTACTGAAGTCCTATGTGCCAGGTATCTCCCCGCTCCTC
TCAGCTTGTGCAGAGGTGTTGACAGTATTATCTTCATTTTCAGTCTCCTTCCAAGTTCTG
TCCTAAGCTATTACCTTTGCAAGTTTCTGGCCCCCACCCTATCAAGTGGGAATCCTTCCT
CTTCCACTTTATCTCCTTCATAATAACGTTGAATTCCCTCCTTTCTCCTGTTTGAGAAAG
GGGGTCAAGAGAAGCAAGAGATAGCCTTGGTCTCTTAAGTCTCCAGAAAGCCCCTCCCCA
CCCCATTTTATCAAAAAAAAATGATACGTATCAACCCCTTCTGTACTTATATGGAAAGGT
ATGTGCTGCCACCTAAACGTCATTCCCCAGACAGGGGACAGAACACCTTCCATCTTTTGG
CAAACATCTCATCTCTCCTGCTACTGCTTCCCCACTTCTTGATTTTTGTCCTATTCTACA
CTTCAGATTTCTATTGTGTTGAACTTGCTGCTTTTTTTCATATTGAAAAGATGACATTGC
CCCAAGAGCCAAAAATAAATGGGAACTGAAAAGAAAGAAAAGAAAAAAAAGAAAAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAATCTCATTTATAACCGTGTGCTGAAAACCTGGATTGGTGACTGCCATCCTAGGCC
GATGTGCTGGCCCAGGGGAAGGAAACTGAGCGAGTAGAAGTCCCTACCATAAAGGGTTGG
GTTTGGAGAGGGGCATCCAGGGTACTGAAGTCCTATGTGCCAGGTATCTCCCCGCTCCTC
TCAGCTTGTGCAGAGGTGTTGACAGTATTATCTTCATTTTCAGTCTCCTTCCAAGTTCTG
TCCTAAGCTATTACCTTTGCAAGTTTCTGGCCCCCACCCTATCAAGTGGGAATCCTTCCT
CTTCCACTTTATCTCCTTCATAATAACGTTGAATTCCCTCCTTTCTCCTGTTTGAGAAAG
GGGGTCAAGAGAAGCAAGAGATAGCCTTGGTCTCTTAAGTCTCCAGAAAGCCCCTCCCCA
CCCCATTTTATCAAAAAAAAATGATACGTATCAACCCCTTCTGTACTTATATGGAAAGGT
ATGTGCTGCCACCTAAACGTCATTCCCCAGACAGGGGACAGAACACCTTCCATCTTTTGG
CAAACATCTCATCTCTCCTGCTACTGCTTCCCCACTTCTTGATTTTTGTCCTATTCTACA
CTTCAGATTTCTATTGTGTTGAACTTGCTGCTTTTTTTCATATTGAAAAGATGACATTGC
CCCAAGAGCCAAAAATAAATGGGAACTGAAAAGAAAGAAAAGAAAAAAAAGAAAAAGGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               37-132, - strand, RNAz p=0.999917
               

               
               250-368, - strand, RNAz p=0.99012

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-132, - strand, RNAz p=0.999917
               

               
               250-368, - strand, RNAz p=0.99012

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-711, gnl|bosTau2|chr12 (27339704-27338978)
               

               
               1-711, gnl|Hg17|chr6 (30800467-30801178)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-711, gnl|bosTau2|chr12 (27339704-27338978)
               

               
               1-711, gnl|Hg17|chr6 (30800467-30801178)

	37-132, - strand, RNAz p=0.999917
	250-368, - strand, RNAz p=0.99012

	1-711, gnl\|bosTau2\|chr12 (27339704-27338978)
	1-711, gnl\|Hg17\|chr6 (30800467-30801178)