Non-Coding RNA Search

Ss1.1-Pig3-SRG8002A13.3

Sequence:


               
               TCCTTGGATATTTTATCCTTCGTTTGCAAATTTGAGTGTGTGCAAGTGTGCATGAATTTC
ATGATTTTTTTTAAAATGGGGTGGGAGGTGGCTGAGGCCTGGGGAATGGAGGAAAATAGA
ATTCATTTTTGTGTGGTTTTGCTTAGTAGAAACATTGGTGGTGTTTTGTTTTGTTTTTTC
TTTTTCCCTGTCAGCTGGTCTGGTGGGTTTATGAATTCTCATTCTTAAAAGATACTGTTG
AGAAATGCTAGAGTTTTAGATTAGGAGTTTTCTACTGTGAATAAAGTTCTGGCTCTGTTA
GCCCGGCCGTTGCTTCTCTCCACTCAGGTCTAGAATCCTAAGCGATGTTCCTTTGTTGTG
AACGTGGTGAACTACAGACCCGTGTGTCTTTGAAAAGCCATCTCTTCGGCAAAATCCCAG
GGTTCCTTGACCTCACTGCTCCTCCTGCCTCCAGCTGTGGCACCTGCTGTTTGCCTCTGG
AAGTTAAAGCCTGTCTGGACCCCCATCTGGCCCCCTCTCCGGAAATTGTGATGCAAGGTG
GGAACTTCTGGATGGACGACCCTGGCTTCAGCAGTGTTGGTGCTGCTGAGTGTGGACCCA
GCGTGTGCAGCATGCATGCAGAGGACACACTGTGCGGGCCTTGCTCTGTTCACTGTGCCC
CCTGCTGCAGGAACTCTGGGAAACAAGAGCCAGCATCCCAGCATCCACACTACCAGTCAG
GCTGTGTTGTTTCAGGGTGGGGACGTGATAAACTACTTGCCTTCTAGAGCTTTTTGTGAA
AAATTAAAAAAAAAAAAAGAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTGGATATTTTATCCTTCGTTTGCAAATTTGAGTGTGTGCAAGTGTGCATGAATTTC
ATGATTTTTTTTAAAATGGGGTGGGAGGTGGCTGAGGCCTGGGGAATGGAGGAAAATAGA
ATTCATTTTTGTGTGGTTTTGCTTAGTAGAAACATTGGTGGTGTTTTGTTTTGTTTTTTC
TTTTTCCCTGTCAGCTGGTCTGGTGGGTTTATGAATTCTCATTCTTAAAAGATACTGTTG
AGAAATGCTAGAGTTTTAGATTAGGAGTTTTCTACTGTGAATAAAGTTCTGGCTCTGTTA
GCCCGGCCGTTGCTTCTCTCCACTCAGGTCTAGAATCCTAAGCGATGTTCCTTTGTTGTG
AACGTGGTGAACTACAGACCCGTGTGTCTTTGAAAAGCCATCTCTTCGGCAAAATCCCAG
GGTTCCTTGACCTCACTGCTCCTCCTGCCTCCAGCTGTGGCACCTGCTGTTTGCCTCTGG
AAGTTAAAGCCTGTCTGGACCCCCATCTGGCCCCCTCTCCGGAAATTGTGATGCAAGGTG
GGAACTTCTGGATGGACGACCCTGGCTTCAGCAGTGTTGGTGCTGCTGAGTGTGGACCCA
GCGTGTGCAGCATGCATGCAGAGGACACACTGTGCGGGCCTTGCTCTGTTCACTGTGCCC
CCTGCTGCAGGAACTCTGGGAAACAAGAGCCAGCATCCCAGCATCCACACTACCAGTCAG
GCTGTGTTGTTTCAGGGTGGGGACGTGATAAACTACTTGCCTTCTAGAGCTTTTTGTGAA
AAATTAAAAAAAAAAAAAGAAGTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               105-249, - strand, RNAz p=0.996894
               

               
               303-413, - strand, RNAz p=0.971459
               

               
               323-440, - strand, RNAz p=0.998968

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-249, - strand, RNAz p=0.996894
               

               
               303-413, - strand, RNAz p=0.971459
               

               
               323-440, - strand, RNAz p=0.998968

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015101, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015101, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-452, gnl|bosTau2|chr5 (6522713-6522260)
               

               
               1-452, gnl|canFam2|chr7 (20203397-20203902)
               

               
               1-452, gnl|echTel1|scaffold_283456 (33684-33201)
               

               
               1-452, gnl|hg17|chr1 (180636842-180637361)
               

               
               1-452, gnl|Hg17|chr1 (180637474-180637046)
               

               
               1-452, gnl|loxAfr1|scaffold_2123 (121276-120773)
               

               
               1-452, gnl|mm7|chr1 (152472084-152471567)
               

               
               1-452, gnl|Mm7|chr1 (152471451-152471900)
               

               
               1-452, gnl|monDom2|scaffold_16 (37960258-37960795)
               

               
               1-452, gnl|panTro1|chr1 (163200044-163200563)
               

               
               1-452, gnl|rheMac2|chr1 (186722346-186721842)
               

               
               1-452, gnl|rn3|chr13 (67475634-67475166)
               


               
               513-794, gnl|bosTau2|chr5 (6522162-6521886)
               

               
               513-794, gnl|Hg17|chr1 (180636919-180636636)
               

               
               513-794, gnl|Mm7|chr1 (152472006-152472244)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-452, gnl|bosTau2|chr5 (6522713-6522260)
               

               
               1-452, gnl|canFam2|chr7 (20203397-20203902)
               

               
               1-452, gnl|echTel1|scaffold_283456 (33684-33201)
               

               
               1-452, gnl|hg17|chr1 (180636842-180637361)
               

               
               1-452, gnl|Hg17|chr1 (180637474-180637046)
               

               
               1-452, gnl|loxAfr1|scaffold_2123 (121276-120773)
               

               
               1-452, gnl|mm7|chr1 (152472084-152471567)
               

               
               1-452, gnl|Mm7|chr1 (152471451-152471900)
               

               
               1-452, gnl|monDom2|scaffold_16 (37960258-37960795)
               

               
               1-452, gnl|panTro1|chr1 (163200044-163200563)
               

               
               1-452, gnl|rheMac2|chr1 (186722346-186721842)
               

               
               1-452, gnl|rn3|chr13 (67475634-67475166)
               


               
               513-794, gnl|bosTau2|chr5 (6522162-6521886)
               

               
               513-794, gnl|Hg17|chr1 (180636919-180636636)
               

               
               513-794, gnl|Mm7|chr1 (152472006-152472244)

	105-249, - strand, RNAz p=0.996894
	303-413, - strand, RNAz p=0.971459
	323-440, - strand, RNAz p=0.998968

	1-452, gnl\|bosTau2\|chr5 (6522713-6522260)
	1-452, gnl\|canFam2\|chr7 (20203397-20203902)
	1-452, gnl\|echTel1\|scaffold_283456 (33684-33201)
	1-452, gnl\|hg17\|chr1 (180636842-180637361)
	1-452, gnl\|Hg17\|chr1 (180637474-180637046)
	1-452, gnl\|loxAfr1\|scaffold_2123 (121276-120773)
	1-452, gnl\|mm7\|chr1 (152472084-152471567)
	1-452, gnl\|Mm7\|chr1 (152471451-152471900)
	1-452, gnl\|monDom2\|scaffold_16 (37960258-37960795)
	1-452, gnl\|panTro1\|chr1 (163200044-163200563)
	1-452, gnl\|rheMac2\|chr1 (186722346-186721842)
	1-452, gnl\|rn3\|chr13 (67475634-67475166)

	513-794, gnl\|bosTau2\|chr5 (6522162-6521886)
	513-794, gnl\|Hg17\|chr1 (180636919-180636636)
	513-794, gnl\|Mm7\|chr1 (152472006-152472244)