Non-Coding RNA Search

Ss1.1-Pig3-SRG8002B05.3

Sequence:


               
               AGGATGACCATAACTGGAGGAGTGAGTTATATGCCCAGATAGCGTCAGAACGGTTACAGG
CCCATGGAAAGGGAAAAGCCCAGATCATCTCTTACCCTGGGACTGGGCATTACATTGAGC
CTCCTTACTTCCCCATGTGCCCAGCTTCCCTGCACAGATTATTGGACAAACCGGTGATCT
GGGGTGGGGAACCCAGAGCTCACTCTAAGGCCCAGATAGATGCCTGGAAGCAAATTCTAA
CCTTCTTCTCCAAACACCTTGGAGCGTTCCCCAAATTGTAATGCATTGGTCTGTTACTTG
ACAAGAGAGATTCAAGATCAGATTTTAGTGTTTAATATTTTTTCTGTGAATCAACTATCC
CCTGGGTAACATTAAATTCTTGTCATTGGTCCATCGTTAAAATGTCTACAAATAAAAAAT
GCTAGAGATTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATGACCATAACTGGAGGAGTGAGTTATATGCCCAGATAGCGTCAGAACGGTTACAGG
CCCATGGAAAGGGAAAAGCCCAGATCATCTCTTACCCTGGGACTGGGCATTACATTGAGC
CTCCTTACTTCCCCATGTGCCCAGCTTCCCTGCACAGATTATTGGACAAACCGGTGATCT
GGGGTGGGGAACCCAGAGCTCACTCTAAGGCCCAGATAGATGCCTGGAAGCAAATTCTAA
CCTTCTTCTCCAAACACCTTGGAGCGTTCCCCAAATTGTAATGCATTGGTCTGTTACTTG
ACAAGAGAGATTCAAGATCAGATTTTAGTGTTTAATATTTTTTCTGTGAATCAACTATCC
CCTGGGTAACATTAAATTCTTGTCATTGGTCCATCGTTAAAATGTCTACAAATAAAAAAT
GCTAGAGATTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               111-259, - strand, RNAz p=0.968979
               

               
               120-259, - strand, RNAz p=0.836308

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-259, - strand, RNAz p=0.968979
               

               
               120-259, - strand, RNAz p=0.836308

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-259, gnl|bosTau2|chr10 (60148995-60149253)
               

               
               1-259, gnl|canFam2|chr8 (49931114-49931363)
               

               
               1-259, gnl|danRer3|chr20 (37442193-37441944)
               

               
               1-259, gnl|dasNov1|scaffold_46889 (7310-7559)
               

               
               1-259, gnl|echTel1|scaffold_156313 (15499-15732)
               

               
               1-259, gnl|fr1|chrUn (100554038-100554287)
               

               
               1-259, gnl|galGal2|chr5 (23429782-23429536)
               

               
               1-259, gnl|hg17|chr14 (73111601-73111850)
               

               
               1-259, gnl|Hg17|chr14 (73111675-73111933)
               

               
               1-259, gnl|loxAfr1|scaffold_19092 (38656-38407)
               

               
               1-259, gnl|mm7|chr12 (82013053-82013296)
               

               
               1-259, gnl|Mm7|chr12 (82013121-82013379)
               

               
               1-259, gnl|monDom2|scaffold_8 (61488706-61488457)
               

               
               1-259, gnl|oryCun1|scaffold_211542 (118027-118276)
               

               
               1-259, gnl|panTro1|chr15 (72875689-72875938)
               

               
               1-259, gnl|rheMac2|chr7 (136681721-136681970)
               

               
               1-259, gnl|rn3|chr6 (108052825-108053068)
               

               
               1-259, gnl|tetNig1|chr14 (4830864-4830615)
               

               
               1-259, gnl|xenTro1|scaffold_731 (332107-332347)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-259, gnl|bosTau2|chr10 (60148995-60149253)
               

               
               1-259, gnl|canFam2|chr8 (49931114-49931363)
               

               
               1-259, gnl|danRer3|chr20 (37442193-37441944)
               

               
               1-259, gnl|dasNov1|scaffold_46889 (7310-7559)
               

               
               1-259, gnl|echTel1|scaffold_156313 (15499-15732)
               

               
               1-259, gnl|fr1|chrUn (100554038-100554287)
               

               
               1-259, gnl|galGal2|chr5 (23429782-23429536)
               

               
               1-259, gnl|hg17|chr14 (73111601-73111850)
               

               
               1-259, gnl|Hg17|chr14 (73111675-73111933)
               

               
               1-259, gnl|loxAfr1|scaffold_19092 (38656-38407)
               

               
               1-259, gnl|mm7|chr12 (82013053-82013296)
               

               
               1-259, gnl|Mm7|chr12 (82013121-82013379)
               

               
               1-259, gnl|monDom2|scaffold_8 (61488706-61488457)
               

               
               1-259, gnl|oryCun1|scaffold_211542 (118027-118276)
               

               
               1-259, gnl|panTro1|chr15 (72875689-72875938)
               

               
               1-259, gnl|rheMac2|chr7 (136681721-136681970)
               

               
               1-259, gnl|rn3|chr6 (108052825-108053068)
               

               
               1-259, gnl|tetNig1|chr14 (4830864-4830615)
               

               
               1-259, gnl|xenTro1|scaffold_731 (332107-332347)

	111-259, - strand, RNAz p=0.968979
	120-259, - strand, RNAz p=0.836308

	1-259, gnl\|bosTau2\|chr10 (60148995-60149253)
	1-259, gnl\|canFam2\|chr8 (49931114-49931363)
	1-259, gnl\|danRer3\|chr20 (37442193-37441944)
	1-259, gnl\|dasNov1\|scaffold_46889 (7310-7559)
	1-259, gnl\|echTel1\|scaffold_156313 (15499-15732)
	1-259, gnl\|fr1\|chrUn (100554038-100554287)
	1-259, gnl\|galGal2\|chr5 (23429782-23429536)
	1-259, gnl\|hg17\|chr14 (73111601-73111850)
	1-259, gnl\|Hg17\|chr14 (73111675-73111933)
	1-259, gnl\|loxAfr1\|scaffold_19092 (38656-38407)
	1-259, gnl\|mm7\|chr12 (82013053-82013296)
	1-259, gnl\|Mm7\|chr12 (82013121-82013379)
	1-259, gnl\|monDom2\|scaffold_8 (61488706-61488457)
	1-259, gnl\|oryCun1\|scaffold_211542 (118027-118276)
	1-259, gnl\|panTro1\|chr15 (72875689-72875938)
	1-259, gnl\|rheMac2\|chr7 (136681721-136681970)
	1-259, gnl\|rn3\|chr6 (108052825-108053068)
	1-259, gnl\|tetNig1\|chr14 (4830864-4830615)
	1-259, gnl\|xenTro1\|scaffold_731 (332107-332347)