Non-Coding RNA Search

Ss1.1-Pig3-SRG8002B16.3

Sequence:


               
               TTTTTCCCGCATATGTGGAATATGGGCAGAGAAAATAATCCCTAAGAATCTGATGAAAAA
AAATTTTGGGGGGGGTGTAACTTAATCCTTGTTGGAAATAACACAGATCTGTGTGAAGAT
TAAGGACGCTTTAAGAAATACCAAAGGTTACCTTCACATTTGGAGTAACAATACGGAACG
TAAGGAAAACAACAAGAGAAGCCAAGCTCCCCCCGCCCCCACTTTGGAGAGCTGCCCAAG
TTTTTTTTTGGGGAAAGTGACATGGCAGAAAGAATAATCAGTTTGAAAGCCTAAGCTGAC
GTGGTTTTTAAGCACTGTGGCATATTAAGCCATGTGTTTTCATGTTTACTTTTAATGGAA
TAGTCTAACAGTATAATAACTTTACCTTTGGATTCTTGCCCTCTTTGGCCAATAATGCCC
GAAGTCTTTCTTGTGAAGGGGGTGCAATGAAGATAATATATGGTTTCAAGTCTGAGTTCC
GTAGAGTCTTCAAGGACTGTAAAGCAAAGACAGATCTGAGAGTTTGATACTGAAACTCCA
ACTAAAAACCCTGATTTATCTATTAAAAAAAATAATTGTAATATATAGAACTATATGTAA
TTTCGTCATGTATTTTCCAAGTCTATAGATGTTATCATTCTTTCATAATTTAAAAAATCA
AAGAGAGAAAAACAAAAAACAACAGAAAAGATCGTACCATTCAACATAATATATTGTGTA
CCAAAACTGAAATGAAGACTTAACATGATAAAATAATAAGATCATACACAGATTATAACA
ACATTAAAAATCCATTTTGAAGGAATTACAAATGAGCAGTCAGCTTAACCATATGCCACA
ATCTAAATGCAAAAGGAATCATAGAAAAACTTCACACACACATGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCCCGCATATGTGGAATATGGGCAGAGAAAATAATCCCTAAGAATCTGATGAAAAA
AAATTTTGGGGGGGGTGTAACTTAATCCTTGTTGGAAATAACACAGATCTGTGTGAAGAT
TAAGGACGCTTTAAGAAATACCAAAGGTTACCTTCACATTTGGAGTAACAATACGGAACG
TAAGGAAAACAACAAGAGAAGCCAAGCTCCCCCCGCCCCCACTTTGGAGAGCTGCCCAAG
TTTTTTTTTGGGGAAAGTGACATGGCAGAAAGAATAATCAGTTTGAAAGCCTAAGCTGAC
GTGGTTTTTAAGCACTGTGGCATATTAAGCCATGTGTTTTCATGTTTACTTTTAATGGAA
TAGTCTAACAGTATAATAACTTTACCTTTGGATTCTTGCCCTCTTTGGCCAATAATGCCC
GAAGTCTTTCTTGTGAAGGGGGTGCAATGAAGATAATATATGGTTTCAAGTCTGAGTTCC
GTAGAGTCTTCAAGGACTGTAAAGCAAAGACAGATCTGAGAGTTTGATACTGAAACTCCA
ACTAAAAACCCTGATTTATCTATTAAAAAAAATAATTGTAATATATAGAACTATATGTAA
TTTCGTCATGTATTTTCCAAGTCTATAGATGTTATCATTCTTTCATAATTTAAAAAATCA
AAGAGAGAAAAACAAAAAACAACAGAAAAGATCGTACCATTCAACATAATATATTGTGTA
CCAAAACTGAAATGAAGACTTAACATGATAAAATAATAAGATCATACACAGATTATAACA
ACATTAAAAATCCATTTTGAAGGAATTACAAATGAGCAGTCAGCTTAACCATATGCCACA
ATCTAAATGCAAAAGGAATCATAGAAAAACTTCACACACACATGCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               248-366, + strand, RNAz p=0.831671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-366, + strand, RNAz p=0.831671

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               95-888, gnl|bosTau2|chr10 (54297693-54298488)
               

               
               95-888, gnl|Mm7|chr12 (76791424-76790675)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-888, gnl|bosTau2|chr10 (54297693-54298488)
               

               
               95-888, gnl|Mm7|chr12 (76791424-76790675)

	95-888, gnl\|bosTau2\|chr10 (54297693-54298488)
	95-888, gnl\|Mm7\|chr12 (76791424-76790675)