Non-Coding RNA Search

Ss1.1-Pig3-SRG8002C18.5

Sequence:


               
               GCGGCTGCGTGGTCCCAGCTTCTTGCATCTTTTCCAGGCCCGTCGGCCTCGGGCCGGGTG
ATGGGGGAGCGATTTCGGTTCCGAAAACTGAGACCAGGAGAGAGGGGAGTCAGGGTTTGA
AAAGCCCTCCTAGGTAGTGTCTTAACCGTGAGGGAGACTGCCGGCATGTTTAGGTGGCTT
GGTACCCGAAACGGCGGTTTTTTCCGTTATGAGGTGGTGGTGGGGGGGATTAAAAATGGC
CGCTGCGTCCCCTCGGTGGTGGGGGAGGGGAGCAGTATCTCGTTTCGCCGTTGGTCTCCT
GCGAAGCCTCGCCGCAGCCATCTTGGGCTGGCGGGCCGGGCGCGCTGCCAAAAGCACAAA
ATGGCGGAGGAGCCGCGCGTCAACGCGGGCCCGACCGGCGGAGGGGCCCACACCTCACAG
GGTCGCGGGGGCTTCGGGAGGGAAAGAAGCTACGTTCTGTGGGGTCTTTCGCTCGTTAGG
GTAAGACAAGGTCGAATTCTGAGCCCCGAATGTATGAAATTCTATAGTGTTCTTGGGGCC
TCTTTTCAGGTGGGGGAACTAGGAGAAGTCCTGGGCCCGTTAGTTTGAGGAGATTACGCG
CGGGCTTTGTGTTCGGCCTAAATGGAGTGTTTTTCTTTGATGTCGAAGAGGGTCTCAAAC
CCTAGATCGTTGCGGTGTCCAAGTAGACCACAAGGTCGCTGATATTTTCTTGTTTTATAG
AGGTTTCCCCCCCCCCCCCACGGGATGGTGGAGAAATTGGCGGGTAACAATTTATGGCGC
CGTTGTTTCCTTTGTTTTGAGGCATTCTTGTTATGTGAACTACAGCTTGTTTTGGTGCGC
TTTTAAGTTTTCACTTAAAAATGTAGAGTTCCCTGAGGGTTGGATCAAGTGCAGAAATAA
GACAGTTCCTGGGCTTAAAAAGCATGATGTAAAGCTTGGTTTTGGGTCCTTGAGTACAAA
TGTGTAAAGATGTAAGACTTGGCAGAATCTTGCCTACTTGGAGCTTGAGATTTGCTGGAA
GGGTAATGAACACCATAGAACTTGATTTTTTTTTTTTTTTTAAAACCTTGATGGGATTAG
GTTAGATGTTACGTAATTTTCCGGTAAAATCTATTCAAATATCTGGTAAATTATTCAAAA
ATCTTCCACAAAGGAATGAAAAAGATTTTAGGTGGTTCATTAGAAGGGTATTGTTGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTGCGTGGTCCCAGCTTCTTGCATCTTTTCCAGGCCCGTCGGCCTCGGGCCGGGTG
ATGGGGGAGCGATTTCGGTTCCGAAAACTGAGACCAGGAGAGAGGGGAGTCAGGGTTTGA
AAAGCCCTCCTAGGTAGTGTCTTAACCGTGAGGGAGACTGCCGGCATGTTTAGGTGGCTT
GGTACCCGAAACGGCGGTTTTTTCCGTTATGAGGTGGTGGTGGGGGGGATTAAAAATGGC
CGCTGCGTCCCCTCGGTGGTGGGGGAGGGGAGCAGTATCTCGTTTCGCCGTTGGTCTCCT
GCGAAGCCTCGCCGCAGCCATCTTGGGCTGGCGGGCCGGGCGCGCTGCCAAAAGCACAAA
ATGGCGGAGGAGCCGCGCGTCAACGCGGGCCCGACCGGCGGAGGGGCCCACACCTCACAG
GGTCGCGGGGGCTTCGGGAGGGAAAGAAGCTACGTTCTGTGGGGTCTTTCGCTCGTTAGG
GTAAGACAAGGTCGAATTCTGAGCCCCGAATGTATGAAATTCTATAGTGTTCTTGGGGCC
TCTTTTCAGGTGGGGGAACTAGGAGAAGTCCTGGGCCCGTTAGTTTGAGGAGATTACGCG
CGGGCTTTGTGTTCGGCCTAAATGGAGTGTTTTTCTTTGATGTCGAAGAGGGTCTCAAAC
CCTAGATCGTTGCGGTGTCCAAGTAGACCACAAGGTCGCTGATATTTTCTTGTTTTATAG
AGGTTTCCCCCCCCCCCCCACGGGATGGTGGAGAAATTGGCGGGTAACAATTTATGGCGC
CGTTGTTTCCTTTGTTTTGAGGCATTCTTGTTATGTGAACTACAGCTTGTTTTGGTGCGC
TTTTAAGTTTTCACTTAAAAATGTAGAGTTCCCTGAGGGTTGGATCAAGTGCAGAAATAA
GACAGTTCCTGGGCTTAAAAAGCATGATGTAAAGCTTGGTTTTGGGTCCTTGAGTACAAA
TGTGTAAAGATGTAAGACTTGGCAGAATCTTGCCTACTTGGAGCTTGAGATTTGCTGGAA
GGGTAATGAACACCATAGAACTTGATTTTTTTTTTTTTTTTAAAACCTTGATGGGATTAG
GTTAGATGTTACGTAATTTTCCGGTAAAATCTATTCAAATATCTGGTAAATTATTCAAAA
ATCTTCCACAAAGGAATGAAAAAGATTTTAGGTGGTTCATTAGAAGGGTATTGTTGGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               176-278, + strand, RNAz p=0.97801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-278, + strand, RNAz p=0.97801

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               277-362, + strand, RNAmicro p=0.937374

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               277-362, + strand, RNAmicro p=0.937374

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-382, gnl|bosTau2|chr1 (54434229-54433857)
               

               
               1-382, gnl|Hg17|chr3 (187138292-187137896)
               

               
               1-382, gnl|Mm7|chr16 (21917018-21916658)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr1 (54434229-54433857)
               

               
               1-382, gnl|Hg17|chr3 (187138292-187137896)
               

               
               1-382, gnl|Mm7|chr16 (21917018-21916658)

	1-382, gnl\|bosTau2\|chr1 (54434229-54433857)
	1-382, gnl\|Hg17\|chr3 (187138292-187137896)
	1-382, gnl\|Mm7\|chr16 (21917018-21916658)