Non-Coding RNA Search

Ss1.1-Pig3-SRG8002D01.3

Sequence:


               
               CTCTTGCCTGTCGGAGTGAGTCCGGCCCGGCTCCCTCGCCCGCCGAGTCAACCCAGGCCT
CAGTGACACTTGCGCAGCTCCTGCAGCTGGTCCAGCAGGGCCAGGAGCTCCCCGGCCTGG
AGAGGCGCCAGGTCGCTGCGACCCTTGACGAACCCACGGCGTCCCGACTCCCGCGGATAC
CCAAGCCCTGGGAGGCCGCGCGCTCCGCGGAGCACCCAGCGCCACAGTTCCAGACTGGGG
ACCGCGGGCTCGCCGACCCTCCGAGTGGGCAGAGGAACCGCCTGGAGGAGCCTGGCTCGG
CCGTTTCTGAGGCTCCAGGTCCTTTGCAGCTGTGAATGAAAAATTTTGCTGCCCTGTCGG
CAAAGGACACTGCAGCCCCAAGGGACACCCCCAGAATGGAGGAAGGCCTGACTACTACTG
AACCCTCAGCCACTGCGGACACTCCCAACCGTGCACCCTGAGGTGCCTCCGGATGGGATA
GAATAAGATACTGGCCTTGGACAGCTAAGGTTTATAGCAAAGGAATGATATTAGTGAGCC
CGGACTCTTATGACTTCCTATGCATGAGAAAAGCTAAATTCTTTGATGTGAACTGTCTGG
TTTTCTTTAACAGTAATCTTTTGATGGTCTGACTACCTGGTTTTGTTGCAAAACTCTTGT
ATATCCTACACAGCAGTCCTTCAGAGCTCTGTGAGGCTGCCTCCTGGGCTTGAGTTCTCA
GTCTGCCAAATAAAACTATTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTGCCTGTCGGAGTGAGTCCGGCCCGGCTCCCTCGCCCGCCGAGTCAACCCAGGCCT
CAGTGACACTTGCGCAGCTCCTGCAGCTGGTCCAGCAGGGCCAGGAGCTCCCCGGCCTGG
AGAGGCGCCAGGTCGCTGCGACCCTTGACGAACCCACGGCGTCCCGACTCCCGCGGATAC
CCAAGCCCTGGGAGGCCGCGCGCTCCGCGGAGCACCCAGCGCCACAGTTCCAGACTGGGG
ACCGCGGGCTCGCCGACCCTCCGAGTGGGCAGAGGAACCGCCTGGAGGAGCCTGGCTCGG
CCGTTTCTGAGGCTCCAGGTCCTTTGCAGCTGTGAATGAAAAATTTTGCTGCCCTGTCGG
CAAAGGACACTGCAGCCCCAAGGGACACCCCCAGAATGGAGGAAGGCCTGACTACTACTG
AACCCTCAGCCACTGCGGACACTCCCAACCGTGCACCCTGAGGTGCCTCCGGATGGGATA
GAATAAGATACTGGCCTTGGACAGCTAAGGTTTATAGCAAAGGAATGATATTAGTGAGCC
CGGACTCTTATGACTTCCTATGCATGAGAAAAGCTAAATTCTTTGATGTGAACTGTCTGG
TTTTCTTTAACAGTAATCTTTTGATGGTCTGACTACCTGGTTTTGTTGCAAAACTCTTGT
ATATCCTACACAGCAGTCCTTCAGAGCTCTGTGAGGCTGCCTCCTGGGCTTGAGTTCTCA
GTCTGCCAAATAAAACTATTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865107|ref|XP_591396.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865107|ref|XP_591396.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               41-160, - strand, RNAz p=0.682836
               

               
               281-398, - strand, RNAz p=0.990631
               

               
               599-718, + strand, RNAz p=0.663235

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.682836
               

               
               281-398, - strand, RNAz p=0.990631
               

               
               599-718, + strand, RNAz p=0.663235

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-744, gnl|bosTau2|chr23 (12980967-12980222)
               


               
               333-668, gnl|bosTau2|chr10 (41118163-41118501)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr23 (12980967-12980222)
               


               
               333-668, gnl|bosTau2|chr10 (41118163-41118501)

	41-160, - strand, RNAz p=0.682836
	281-398, - strand, RNAz p=0.990631
	599-718, + strand, RNAz p=0.663235

	1-744, gnl\|bosTau2\|chr23 (12980967-12980222)

	333-668, gnl\|bosTau2\|chr10 (41118163-41118501)