Non-Coding RNA Search

Ss1.1-Pig3-SRG8002D24.5

Sequence:


               
               GAAACCTCCCAAGTATTTGCGTTTGATTATTGCTTTTGGTCCATGGATGAATCTAACACC
ACAAAATATGCTGGTCAAGAAGTGGTTTTTAAGTGCCTTGGGGAAGGAATTCTTGAGAAA
GCTTTTCAGGGATATAATGCTTGCATTTTTGCATATGGACAGACAGGCTCAGGAAAATCC
TTCTCCATGATGGGCAGCGCCGAGCAGCGGGGCCTCATTCCAAGGCTCTGCTGTGCTTTA
TTTCAAAGGATCTCTCTGGAGCAGAATGAGTCACAGACCTTTAAAGTCGAAGTATCCTAT
ATGGAAATTTACAACGAGAAAGTTCGAGATCTTTTAGACCCCAAAGAAAGAGAAGCTCGA
AGAGTCTGAAAAGCTGATAAAAGAATTAACAGTGACTTGGGAAGAGAAACTGAGAAAAAC
AGAAGAAATTGCACAGGAGAGGCAGCGGCAACTTGAAAGTATGGGGATTTCCCTGGAGAC
TTCTGGTATCAAAGTGGGAGATGACAAGTGCTACTTAGTCAACTTGAACGCAGACCCTGC
TCTCAACGAACTTATGGTGTATTATTTAAAGGACCATACCAGGGTAGGTGCAGATACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACCTCCCAAGTATTTGCGTTTGATTATTGCTTTTGGTCCATGGATGAATCTAACACC
ACAAAATATGCTGGTCAAGAAGTGGTTTTTAAGTGCCTTGGGGAAGGAATTCTTGAGAAA
GCTTTTCAGGGATATAATGCTTGCATTTTTGCATATGGACAGACAGGCTCAGGAAAATCC
TTCTCCATGATGGGCAGCGCCGAGCAGCGGGGCCTCATTCCAAGGCTCTGCTGTGCTTTA
TTTCAAAGGATCTCTCTGGAGCAGAATGAGTCACAGACCTTTAAAGTCGAAGTATCCTAT
ATGGAAATTTACAACGAGAAAGTTCGAGATCTTTTAGACCCCAAAGAAAGAGAAGCTCGA
AGAGTCTGAAAAGCTGATAAAAGAATTAACAGTGACTTGGGAAGAGAAACTGAGAAAAAC
AGAAGAAATTGCACAGGAGAGGCAGCGGCAACTTGAAAGTATGGGGATTTCCCTGGAGAC
TTCTGGTATCAAAGTGGGAGATGACAAGTGCTACTTAGTCAACTTGAACGCAGACCCTGC
TCTCAACGAACTTATGGTGTATTATTTAAAGGACCATACCAGGGTAGGTGCAGATACTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61851466|ref|XP_600767.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61851466|ref|XP_600767.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-319, + strand, RNAz p=0.99876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-319, + strand, RNAz p=0.99876

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-346, gnl|bosTau2|chr16 (20193756-20193415)
               


               
               68-345, gnl|bosTau2|chr12 (35810141-35810418)
               

               
               68-345, gnl|Hg17|chr6 (17964333-17963649)
               

               
               68-345, gnl|Mm7|chr13 (46314916-46312895)
               


               
               430-572, gnl|bosTau2|chr23 (30059337-30059479)
               

               
               430-572, gnl|Hg17|chr6 (17939454-17939310)
               

               
               430-572, gnl|Mm7|chr13 (46294969-46294827)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-346, gnl|bosTau2|chr16 (20193756-20193415)
               


               
               68-345, gnl|bosTau2|chr12 (35810141-35810418)
               

               
               68-345, gnl|Hg17|chr6 (17964333-17963649)
               

               
               68-345, gnl|Mm7|chr13 (46314916-46312895)
               


               
               430-572, gnl|bosTau2|chr23 (30059337-30059479)
               

               
               430-572, gnl|Hg17|chr6 (17939454-17939310)
               

               
               430-572, gnl|Mm7|chr13 (46294969-46294827)

	1-346, gnl\|bosTau2\|chr16 (20193756-20193415)

	68-345, gnl\|bosTau2\|chr12 (35810141-35810418)
	68-345, gnl\|Hg17\|chr6 (17964333-17963649)
	68-345, gnl\|Mm7\|chr13 (46314916-46312895)

	430-572, gnl\|bosTau2\|chr23 (30059337-30059479)
	430-572, gnl\|Hg17\|chr6 (17939454-17939310)
	430-572, gnl\|Mm7\|chr13 (46294969-46294827)