Non-Coding RNA Search

Ss1.1-Pig3-SRG8002E19.3

Sequence:


               
               TTTAATTGGAAAGAGAAACCTGAATATTTTTAGCAAATTTTTTGCCTTAGTGCTTTCATG
TAGAGTTGTATGCTTAAGACACACACACGATTGCATTTCCTGAAAATATTGGCTCATAAT
TGCTGCACTCTTAAGGATGTATTTTCATATATAATTCAGGAAAGAAAAATTATTGCATGT
GATAGATTAGTATTACCACATAAAAGTACTGATTTGTGTATCCTATTTTAGTGCATTGCT
AATTCTTAAGAGAGAACTATACAGTAATTTCTAAGAAACCAGACAGTTTAATTTTGCTGC
TGGTGTCAGGTTAAAGCATTGGCATAGGTTTGCAGCTGCAGTTGTGGCTTCATCTAGTCC
TTGTGTGGGACACTCTTGAACAGCAAGGATTCTGGCTGGGGCTCACCCAGACAATTTACT
CCCACCCCAGTCTCACCATTTGTGGTTTCCTGGTCTTTGAGGGGGAGATATCTCCAGCTT
TCACGCCATCTGAGATGAGGCTGAGTTTCGCAGAAAGAGCTGTTCCCAAGACAGTGCTAA
GGGAAAGCACGCACAGTAAGATACCGTGTAAAGAAATGGATGAACACAGGTTTGTTTGGT
TGGTTTTTTTGAAACTTAATTAGGTGGATCTGACTGTAGATTGATTTTTCTGGCTGGACT
TGAAGATGCATTTATATCCAGTTTGTCTTCCTTAAAAAACAAAACAAAACGCCCCAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAATTGGAAAGAGAAACCTGAATATTTTTAGCAAATTTTTTGCCTTAGTGCTTTCATG
TAGAGTTGTATGCTTAAGACACACACACGATTGCATTTCCTGAAAATATTGGCTCATAAT
TGCTGCACTCTTAAGGATGTATTTTCATATATAATTCAGGAAAGAAAAATTATTGCATGT
GATAGATTAGTATTACCACATAAAAGTACTGATTTGTGTATCCTATTTTAGTGCATTGCT
AATTCTTAAGAGAGAACTATACAGTAATTTCTAAGAAACCAGACAGTTTAATTTTGCTGC
TGGTGTCAGGTTAAAGCATTGGCATAGGTTTGCAGCTGCAGTTGTGGCTTCATCTAGTCC
TTGTGTGGGACACTCTTGAACAGCAAGGATTCTGGCTGGGGCTCACCCAGACAATTTACT
CCCACCCCAGTCTCACCATTTGTGGTTTCCTGGTCTTTGAGGGGGAGATATCTCCAGCTT
TCACGCCATCTGAGATGAGGCTGAGTTTCGCAGAAAGAGCTGTTCCCAAGACAGTGCTAA
GGGAAAGCACGCACAGTAAGATACCGTGTAAAGAAATGGATGAACACAGGTTTGTTTGGT
TGGTTTTTTTGAAACTTAATTAGGTGGATCTGACTGTAGATTGATTTTTCTGGCTGGACT
TGAAGATGCATTTATATCCAGTTTGTCTTCCTTAAAAAACAAAACAAAACGCCCCAAAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               310-423, - strand, RNAz p=0.638849
               

               
               577-688, + strand, RNAz p=0.753664

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-423, - strand, RNAz p=0.638849
               

               
               577-688, + strand, RNAz p=0.753664

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr6 (66863239-66862525)
               

               
               1-720, gnl|Hg17|chr9 (14234226-14233491)
               

               
               1-720, gnl|Mm7|chr4 (81845603-81844963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr6 (66863239-66862525)
               

               
               1-720, gnl|Hg17|chr9 (14234226-14233491)
               

               
               1-720, gnl|Mm7|chr4 (81845603-81844963)

	310-423, - strand, RNAz p=0.638849
	577-688, + strand, RNAz p=0.753664

	1-720, gnl\|bosTau2\|chr6 (66863239-66862525)
	1-720, gnl\|Hg17\|chr9 (14234226-14233491)
	1-720, gnl\|Mm7\|chr4 (81845603-81844963)