Non-Coding RNA Search

Ss1.1-Pig3-SRG8002G22.3

Sequence:


               
               AACCCCCAACAGCAGGGAGCTGGGGATGCAGAAGAGGAGGAGGAGTAACAAGCGTCCATA
GAGAACTCGCGCGCTGGTTCCATCTTCTCCGCACGACTTGTCATGGTGCAGCCCTGCCCC
TCGGGCTCTGTGGGCAGGGGCAACCTTTCAGATTTTAACGTTTTCTAAGTTATGGCCATT
TTGTGTCTTTTGAGATTGTGCTGTGGGAGTTTAGGGGTTTGAGGGAGGGTTGGCAGGGAG
GCTGTTGAGAATATTTCAGCTTTAGCTGCTGCCTTTGACAGCACAGAAGTGTACATTAGG
GCCCCTCACCCCACCAGGGCTTCATCTTTTGACATACTGTCACCGTCGCTTCATGGTGCT
GTGGGGTCCTGGTGGGAAAGAGGGAAGGTTCTGGAAAGCTGGTCCCACCAGTGAGGTGAT
GCTCGTCCTGTGGTGGCCTGAATTTGGGACCTTGGGGGTAACCTCTCGTGTGTCCTGCCC
ATCCCCACTCTAGAATTTGGGCTCTAGGGTGCATGGAGGAACTTTGCTAAAGTGTTCAGG
CCAGTTGTAATATGCGTTAGGAACAAGGCTTTTGGAGATGAGGTTTAGGTGCGTGGACTA
CAGGCTTTGTTTTAATCTGCTTCTTTGGCATTTGGCATCACTGCCTTCTGTTTCTGAGGG
GAGCATGGCTTCTTTGTCTTCACTACCTTCTGATGGAGAAGGCCAGGGGCTCCCTGTGCC
CTCCAGAGCCGTGCTGGGTTCTGCCTTAATCAGGACTGAAGCCTAAACTCGTGTTTGGCT
CTGAAAACCAAGAATCAGAGCCCCCTCCCCTCTTTTTATTTTACTATTACTGTTATTAAC
ATCCTTGTAATAAACTTTGTACTCGTAAAAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCCCAACAGCAGGGAGCTGGGGATGCAGAAGAGGAGGAGGAGTAACAAGCGTCCATA
GAGAACTCGCGCGCTGGTTCCATCTTCTCCGCACGACTTGTCATGGTGCAGCCCTGCCCC
TCGGGCTCTGTGGGCAGGGGCAACCTTTCAGATTTTAACGTTTTCTAAGTTATGGCCATT
TTGTGTCTTTTGAGATTGTGCTGTGGGAGTTTAGGGGTTTGAGGGAGGGTTGGCAGGGAG
GCTGTTGAGAATATTTCAGCTTTAGCTGCTGCCTTTGACAGCACAGAAGTGTACATTAGG
GCCCCTCACCCCACCAGGGCTTCATCTTTTGACATACTGTCACCGTCGCTTCATGGTGCT
GTGGGGTCCTGGTGGGAAAGAGGGAAGGTTCTGGAAAGCTGGTCCCACCAGTGAGGTGAT
GCTCGTCCTGTGGTGGCCTGAATTTGGGACCTTGGGGGTAACCTCTCGTGTGTCCTGCCC
ATCCCCACTCTAGAATTTGGGCTCTAGGGTGCATGGAGGAACTTTGCTAAAGTGTTCAGG
CCAGTTGTAATATGCGTTAGGAACAAGGCTTTTGGAGATGAGGTTTAGGTGCGTGGACTA
CAGGCTTTGTTTTAATCTGCTTCTTTGGCATTTGGCATCACTGCCTTCTGTTTCTGAGGG
GAGCATGGCTTCTTTGTCTTCACTACCTTCTGATGGAGAAGGCCAGGGGCTCCCTGTGCC
CTCCAGAGCCGTGCTGGGTTCTGCCTTAATCAGGACTGAAGCCTAAACTCGTGTTTGGCT
CTGAAAACCAAGAATCAGAGCCCCCTCCCCTCTTTTTATTTTACTATTACTGTTATTAAC
ATCCTTGTAATAAACTTTGTACTCGTAAAAAAAGAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               193-390, - strand, RNAz p=0.997743
               

               
               429-547, - strand, RNAz p=0.579271
               

               
               626-824, - strand, RNAz p=0.997335

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-390, - strand, RNAz p=0.997743
               

               
               429-547, - strand, RNAz p=0.579271
               

               
               626-824, - strand, RNAz p=0.997335

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               303-383, + strand, RNAmicro p=0.997978
               

               
               648-759, + strand, RNAmicro p=0.996597

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               303-383, + strand, RNAmicro p=0.997978
               

               
               648-759, + strand, RNAmicro p=0.996597

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-863, gnl|bosTau2|chr17 (36985791-36986654)
               

               
               1-863, gnl|Hg17|chr12 (111053264-111054119)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr17 (36985791-36986654)
               

               
               1-863, gnl|Hg17|chr12 (111053264-111054119)

	193-390, - strand, RNAz p=0.997743
	429-547, - strand, RNAz p=0.579271
	626-824, - strand, RNAz p=0.997335

	303-383, + strand, RNAmicro p=0.997978
	648-759, + strand, RNAmicro p=0.996597

	1-863, gnl\|bosTau2\|chr17 (36985791-36986654)
	1-863, gnl\|Hg17\|chr12 (111053264-111054119)