Non-Coding RNA Search

Ss1.1-Pig3-SRG8002I17.3

Sequence:


               
               CCACAATGTCATGGTTCCTAGTTAGATTTATTTGTTTCCACTGTGCCACAAGGGAAACTC
ATTTGTTCTTTTGTATCTTCCTCCAACCTGCTTAGATTTAATGTGCTCTTTTTCTTACTT
CCTAAGGTAGAAACTTGGGCTTTTGTTGGTTTTCAAGTTTTTTCTTGACCTTTTTTACCC
ATACTGTAAAACATTTGTCTCCCTTGTGGTGGGTGGCAGCTAAAATCTTAGTTTGATTCT
TTTAGCCTTGGCTAGGACACTTGGCTTCTTCCCTATGCACACATGGTTCATGGGTCATCA
GAGACCCAGGCAGAGTTTGGAGCTCTCCTTTTAGTCTCTCTTACTTATAATAGCTACTGT
AAAGTTCTCTGCTAATTCCAACATGTGGGTCTTTGGGTCATTTTAAGATCTTCTGGTTGA
GTACTTTTTTTCTACACCAGAGAGTACTTTACTCTTTCTAGAATTTCATCTCTACTTCTT
GCCACTTTACAAACTGTATAAATGAAGATCTCACCCACGTTGGGTCCTTTCTTTCAAGGA
CTGACCCCCCTTTTGGTCACTCTACATCAGGTTTTGCTTAAGGGTTTTTACTTGTTATAT
GCAGGAAGGTTGATCTGATGAGGTATGTCACTTCATTTTAATTAAGGATATTTAGAACTT
TTTATCATGACTGTATTAGATGTGATCACTTCTCCATATTTTGTCTTGGGGTTGCTAAAT
TTTGACATTTATATTTTCTTCAATTTTCTCAATTTAGAAGAGTTTGGTGCTTTGGAAAGT
GTGAAAGCTGCTAGTGAACTCTATTCTCCTCTATCAGGAGAAGTAACTGCAATTAATGAA
GCTCTAGCAGAAAATCCAGGACTTGTCAACAAATCTTGTTATGAAGATGGTAAGTTGCTA
GGAATTTTTTAAAAGATTATTTACTGCAGTTAATGTTTAATCTAGAGTTTAAAGCAAGCT
TTGGCTGATTGTGACTTCTTTTCATACTTTGTACTAAATAAAGATATTCTGCTTTAAAAA
AGGAAAACGCACATAAAAAATTAATTAAAAAAACAGATTAGCTGAACATATAAGGTTATG
GTTTAAGATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAATGTCATGGTTCCTAGTTAGATTTATTTGTTTCCACTGTGCCACAAGGGAAACTC
ATTTGTTCTTTTGTATCTTCCTCCAACCTGCTTAGATTTAATGTGCTCTTTTTCTTACTT
CCTAAGGTAGAAACTTGGGCTTTTGTTGGTTTTCAAGTTTTTTCTTGACCTTTTTTACCC
ATACTGTAAAACATTTGTCTCCCTTGTGGTGGGTGGCAGCTAAAATCTTAGTTTGATTCT
TTTAGCCTTGGCTAGGACACTTGGCTTCTTCCCTATGCACACATGGTTCATGGGTCATCA
GAGACCCAGGCAGAGTTTGGAGCTCTCCTTTTAGTCTCTCTTACTTATAATAGCTACTGT
AAAGTTCTCTGCTAATTCCAACATGTGGGTCTTTGGGTCATTTTAAGATCTTCTGGTTGA
GTACTTTTTTTCTACACCAGAGAGTACTTTACTCTTTCTAGAATTTCATCTCTACTTCTT
GCCACTTTACAAACTGTATAAATGAAGATCTCACCCACGTTGGGTCCTTTCTTTCAAGGA
CTGACCCCCCTTTTGGTCACTCTACATCAGGTTTTGCTTAAGGGTTTTTACTTGTTATAT
GCAGGAAGGTTGATCTGATGAGGTATGTCACTTCATTTTAATTAAGGATATTTAGAACTT
TTTATCATGACTGTATTAGATGTGATCACTTCTCCATATTTTGTCTTGGGGTTGCTAAAT
TTTGACATTTATATTTTCTTCAATTTTCTCAATTTAGAAGAGTTTGGTGCTTTGGAAAGT
GTGAAAGCTGCTAGTGAACTCTATTCTCCTCTATCAGGAGAAGTAACTGCAATTAATGAA
GCTCTAGCAGAAAATCCAGGACTTGTCAACAAATCTTGTTATGAAGATGGTAAGTTGCTA
GGAATTTTTTAAAAGATTATTTACTGCAGTTAATGTTTAATCTAGAGTTTAAAGCAAGCT
TTGGCTGATTGTGACTTCTTTTCATACTTTGTACTAAATAAAGATATTCTGCTTTAAAAA
AGGAAAACGCACATAAAAAATTAATTAAAAAAACAGATTAGCTGAACATATAAGGTTATG
GTTTAAGATCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62657527|ref|XP_343995.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62657527|ref|XP_343995.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               752-908, - strand, RNAz p=0.959729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               752-908, - strand, RNAz p=0.959729

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               636-1027, gnl|bosTau2|chr18 (7617284-7617679)
               


               
               756-889, gnl|bosTau2|chr10 (13368857-13368990)
               

               
               756-889, gnl|Hg17|chr1 (164757028-164756895)
               

               
               756-889, gnl|Mm7|chr9 (107890150-107890283)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               636-1027, gnl|bosTau2|chr18 (7617284-7617679)
               


               
               756-889, gnl|bosTau2|chr10 (13368857-13368990)
               

               
               756-889, gnl|Hg17|chr1 (164757028-164756895)
               

               
               756-889, gnl|Mm7|chr9 (107890150-107890283)

	636-1027, gnl\|bosTau2\|chr18 (7617284-7617679)

	756-889, gnl\|bosTau2\|chr10 (13368857-13368990)
	756-889, gnl\|Hg17\|chr1 (164757028-164756895)
	756-889, gnl\|Mm7\|chr9 (107890150-107890283)