Ss1.1-Pig3-SRG8002M19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAAGCTTCAGCCCCGCGGAGGCAACGCGCGTTTCTTGTCGCTTCTCTCTTCCAACATG TTCCCGGCCGTCTCGTCTCCGCGGACCCCGGGGCCTGGGGCTCGTAGGGGACCTCTGGGG GGAGTCGGGCCAGGCTCCACACCCCGGGCTACCAGCAGGAAGGGTCTGGCCCTGGGGTCT GCGGTCAGCTCCCCGGTGCTCTTCTCGCCCGTCGGCCGTCGTAGCTCGGTGAGCTCGCGA GGAACACCTACACGCATATTCCCACACCACTCCATAACTGAGTCTGTGAACTATGATGTG AAAACGTTTGGATCTTCTCTCCCTGTTAAAATCATGGAAGCCCTAACATTGGCTGAAGTT GATGACCACCTGACAGTTCACATAGATGAGGGTGGATGGGCTTGTCTGGTCTGCAGAGAG AAACTCATCATTTGGAAGATTGCTCTGTCACCTATTTCCAAGCTGTCTGTTTGCAAAGAA CTTCAGCTGCCACCAAGTGATTTCCACTGGAGTGCTGACTTGGTGGCTCTCTCGTATTCT GCTGCCTCAGGTGAATCACATTCTACTCAGGCTGTTGCTGTCATGGTGGCCACCAGAGAA GGATCCATCCGCTACTGGCCAAGCCTTGCTAGTGAGGACACCTACACAGAGACGACCGTG GACTCAGGAGGGGATAAGACTTACAGCTTCCTAACAGCCGTGCAGGGAGGAAGTTTTATC TTGTCCTCTTCAGGAGGCCAGCAAATTCGTCTGATCCCTGAAAGTTTAGGAAAGATCCAC CAGCATATCCTGCCTCAAGGGCAAGGCGTGCTTTCAGGAATTGGTCGGAAGGTTTCTTCT CTTTTGGGAATTTTGTCTCCTAGTAGTGATCTCCTACTTTCAAGTGTCCTTTGGGATAGA GAGAGATCAAGCTTTTATAGCCTGACAAGTTCAAACATCAGTAAATGGGAATTAGATGAT TCTTCGGAAAAACAAGTACATAGTTGGGATATAAATAGAGTCCTGAAGGAAACATTATAG ATGCTATTTGGGGATCTGAAAGTACTATGAAGCTATTAAAGAAGGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAAGCTTCAGCCCCGCGGAGGCAACGCGCGTTTCTTGTCGCTTCTCTCTTCCAACATG TTCCCGGCCGTCTCGTCTCCGCGGACCCCGGGGCCTGGGGCTCGTAGGGGACCTCTGGGG GGAGTCGGGCCAGGCTCCACACCCCGGGCTACCAGCAGGAAGGGTCTGGCCCTGGGGTCT GCGGTCAGCTCCCCGGTGCTCTTCTCGCCCGTCGGCCGTCGTAGCTCGGTGAGCTCGCGA GGAACACCTACACGCATATTCCCACACCACTCCATAACTGAGTCTGTGAACTATGATGTG AAAACGTTTGGATCTTCTCTCCCTGTTAAAATCATGGAAGCCCTAACATTGGCTGAAGTT GATGACCACCTGACAGTTCACATAGATGAGGGTGGATGGGCTTGTCTGGTCTGCAGAGAG AAACTCATCATTTGGAAGATTGCTCTGTCACCTATTTCCAAGCTGTCTGTTTGCAAAGAA CTTCAGCTGCCACCAAGTGATTTCCACTGGAGTGCTGACTTGGTGGCTCTCTCGTATTCT GCTGCCTCAGGTGAATCACATTCTACTCAGGCTGTTGCTGTCATGGTGGCCACCAGAGAA GGATCCATCCGCTACTGGCCAAGCCTTGCTAGTGAGGACACCTACACAGAGACGACCGTG GACTCAGGAGGGGATAAGACTTACAGCTTCCTAACAGCCGTGCAGGGAGGAAGTTTTATC TTGTCCTCTTCAGGAGGCCAGCAAATTCGTCTGATCCCTGAAAGTTTAGGAAAGATCCAC CAGCATATCCTGCCTCAAGGGCAAGGCGTGCTTTCAGGAATTGGTCGGAAGGTTTCTTCT CTTTTGGGAATTTTGTCTCCTAGTAGTGATCTCCTACTTTCAAGTGTCCTTTGGGATAGA GAGAGATCAAGCTTTTATAGCCTGACAAGTTCAAACATCAGTAAATGGGAATTAGATGAT TCTTCGGAAAAACAAGTACATAGTTGGGATATAAATAGAGTCCTGAAGGAAACATTATAG ATGCTATTTGGGGATCTGAAAGTACTATGAAGCTATTAAAGAAGGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 703-873, + strand, RNAz p=0.954897 | |
| 736-852, - strand, RNAz p=0.976064 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 703-873, + strand, RNAz p=0.954897 | |
| 736-852, - strand, RNAz p=0.976064 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 6-239, gnl|bosTau2|chr28 (393518-393751) | |
| 6-239, gnl|canFam2|chr4 (12751449-12751146) | |
| 6-239, gnl|dasNov1|scaffold_2600 (66271-66564) | |
| 6-239, gnl|echTel1|scaffold_11153 (1284-998) | |
| 6-239, gnl|galGal2|chr3 (36203835-36204111) | |
| 6-239, gnl|hg17|chr1 (225950544-225950847) | |
| 6-239, gnl|Hg17|chr1 (225950785-225950550) | |
| 6-239, gnl|loxAfr1|scaffold_36049 (56335-56032) | |
| 6-239, gnl|mm7|chr8 (122536133-122536426) | |
| 6-239, gnl|Mm7|chr8 (122536361-122536139) | |
| 6-239, gnl|monDom2|scaffold_13 (57431546-57431820) | |
| 6-239, gnl|oryCun1|scaffold_140199 (29003-29284) | |
| 6-239, gnl|panTro1|chr1 (209787977-209788280) | |
| 6-239, gnl|rheMac2|chr1 (227447143-227446840) | |
| 6-239, gnl|rn3|chr19 (54144579-54144871) | |
| 461-571, gnl|bosTau2|chr28 (401625-401735) | |
| 461-571, gnl|canFam2|chr4 (12758184-12758052) | |
| 461-571, gnl|echTel1|scaffold_226595 (7538-7407) | |
| 461-571, gnl|galGal2|chr3 (36200802-36200919) | |
| 461-571, gnl|hg17|chr1 (225943222-225943354) | |
| 461-571, gnl|Hg17|chr1 (225943347-225943237) | |
| 461-571, gnl|mm7|chr8 (122528165-122528292) | |
| 461-571, gnl|Mm7|chr8 (122528285-122528175) | |
| 461-571, gnl|monDom2|scaffold_13 (57421099-57421225) | |
| 461-571, gnl|oryCun1|scaffold_140199 (21395-21524) | |
| 461-571, gnl|panTro1|chr1 (209780682-209780814) | |
| 461-571, gnl|rheMac2|chr1 (227454678-227454546) | |
| 461-571, gnl|rn3|chr19 (54137665-54137796) | |
| 461-571, gnl|xenTro1|scaffold_217 (26314-26203) | |
| 703-873, gnl|bosTau2|chr28 (403951-404121) | |
| 703-873, gnl|canFam2|chr4 (12761045-12760841) | |
| 703-873, gnl|dasNov1|scaffold_298897 (361-154) | |
| 703-873, gnl|echTel1|scaffold_226595 (11558-11355) | |
| 703-873, gnl|galGal2|chr3 (36198604-36198801) | |
| 703-873, gnl|hg17|chr1 (225940602-225940805) | |
| 703-873, gnl|Hg17|chr1 (225940791-225940621) | |
| 703-873, gnl|loxAfr1|scaffold_21045 (13959-13756) | |
| 703-873, gnl|mm7|chr8 (122525261-122525460) | |
| 703-873, gnl|Mm7|chr8 (122525449-122525279) | |
| 703-873, gnl|monDom2|scaffold_13 (57419854-57420061) | |
| 703-873, gnl|oryCun1|scaffold_140199 (18232-18433) | |
| 703-873, gnl|panTro1|chr1 (209778067-209778270) | |
| 703-873, gnl|rheMac2|chr1 (227457294-227457094) | |
| 703-873, gnl|rn3|chr19 (54134714-54134913) | |
| 703-873, gnl|tetNig1|chr18 (10008244-10008049) | |
| 703-873, gnl|xenTro1|scaffold_217 (26623-26405) | |
| 877-1032, gnl|bosTau2|chr28 (405753-405909) | |
| 877-1032, gnl|canFam2|chr4 (12762987-12762874) | |
| 877-1032, gnl|danRer3|chr1 (52643721-52643837) | |
| 877-1032, gnl|dasNov1|scaffold_2600 (55043-55156) | |
| 877-1032, gnl|echTel1|scaffold_226595 (12416-12303) | |
| 877-1032, gnl|fr1|chrUn (150261314-150261201) | |
| 877-1032, gnl|galGal2|chr3 (36198051-36198164) | |
| 877-1032, gnl|hg17|chr1 (225938370-225938483) | |
| 877-1032, gnl|Hg17|chr1 (225938529-225938373) | |
| 877-1032, gnl|loxAfr1|scaffold_21045 (16500-16387) | |
| 877-1032, gnl|mm7|chr8 (122523968-122524081) | |
| 877-1032, gnl|Mm7|chr8 (122524127-122523971) | |
| 877-1032, gnl|monDom2|scaffold_13 (57418691-57418804) | |
| 877-1032, gnl|oryCun1|scaffold_140199 (16175-16288) | |
| 877-1032, gnl|panTro1|chr1 (209775843-209775956) | |
| 877-1032, gnl|rheMac2|chr1 (227459481-227459368) | |
| 877-1032, gnl|rn3|chr19 (54133691-54133804) | |
| 877-1032, gnl|tetNig1|chr18 (10008564-10008451) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-239, gnl|bosTau2|chr28 (393518-393751) | |
| 6-239, gnl|canFam2|chr4 (12751449-12751146) | |
| 6-239, gnl|dasNov1|scaffold_2600 (66271-66564) | |
| 6-239, gnl|echTel1|scaffold_11153 (1284-998) | |
| 6-239, gnl|galGal2|chr3 (36203835-36204111) | |
| 6-239, gnl|hg17|chr1 (225950544-225950847) | |
| 6-239, gnl|Hg17|chr1 (225950785-225950550) | |
| 6-239, gnl|loxAfr1|scaffold_36049 (56335-56032) | |
| 6-239, gnl|mm7|chr8 (122536133-122536426) | |
| 6-239, gnl|Mm7|chr8 (122536361-122536139) | |
| 6-239, gnl|monDom2|scaffold_13 (57431546-57431820) | |
| 6-239, gnl|oryCun1|scaffold_140199 (29003-29284) | |
| 6-239, gnl|panTro1|chr1 (209787977-209788280) | |
| 6-239, gnl|rheMac2|chr1 (227447143-227446840) | |
| 6-239, gnl|rn3|chr19 (54144579-54144871) | |
| 461-571, gnl|bosTau2|chr28 (401625-401735) | |
| 461-571, gnl|canFam2|chr4 (12758184-12758052) | |
| 461-571, gnl|echTel1|scaffold_226595 (7538-7407) | |
| 461-571, gnl|galGal2|chr3 (36200802-36200919) | |
| 461-571, gnl|hg17|chr1 (225943222-225943354) | |
| 461-571, gnl|Hg17|chr1 (225943347-225943237) | |
| 461-571, gnl|mm7|chr8 (122528165-122528292) | |
| 461-571, gnl|Mm7|chr8 (122528285-122528175) | |
| 461-571, gnl|monDom2|scaffold_13 (57421099-57421225) | |
| 461-571, gnl|oryCun1|scaffold_140199 (21395-21524) | |
| 461-571, gnl|panTro1|chr1 (209780682-209780814) | |
| 461-571, gnl|rheMac2|chr1 (227454678-227454546) | |
| 461-571, gnl|rn3|chr19 (54137665-54137796) | |
| 461-571, gnl|xenTro1|scaffold_217 (26314-26203) | |
| 703-873, gnl|bosTau2|chr28 (403951-404121) | |
| 703-873, gnl|canFam2|chr4 (12761045-12760841) | |
| 703-873, gnl|dasNov1|scaffold_298897 (361-154) | |
| 703-873, gnl|echTel1|scaffold_226595 (11558-11355) | |
| 703-873, gnl|galGal2|chr3 (36198604-36198801) | |
| 703-873, gnl|hg17|chr1 (225940602-225940805) | |
| 703-873, gnl|Hg17|chr1 (225940791-225940621) | |
| 703-873, gnl|loxAfr1|scaffold_21045 (13959-13756) | |
| 703-873, gnl|mm7|chr8 (122525261-122525460) | |
| 703-873, gnl|Mm7|chr8 (122525449-122525279) | |
| 703-873, gnl|monDom2|scaffold_13 (57419854-57420061) | |
| 703-873, gnl|oryCun1|scaffold_140199 (18232-18433) | |
| 703-873, gnl|panTro1|chr1 (209778067-209778270) | |
| 703-873, gnl|rheMac2|chr1 (227457294-227457094) | |
| 703-873, gnl|rn3|chr19 (54134714-54134913) | |
| 703-873, gnl|tetNig1|chr18 (10008244-10008049) | |
| 703-873, gnl|xenTro1|scaffold_217 (26623-26405) | |
| 877-1032, gnl|bosTau2|chr28 (405753-405909) | |
| 877-1032, gnl|canFam2|chr4 (12762987-12762874) | |
| 877-1032, gnl|danRer3|chr1 (52643721-52643837) | |
| 877-1032, gnl|dasNov1|scaffold_2600 (55043-55156) | |
| 877-1032, gnl|echTel1|scaffold_226595 (12416-12303) | |
| 877-1032, gnl|fr1|chrUn (150261314-150261201) | |
| 877-1032, gnl|galGal2|chr3 (36198051-36198164) | |
| 877-1032, gnl|hg17|chr1 (225938370-225938483) | |
| 877-1032, gnl|Hg17|chr1 (225938529-225938373) | |
| 877-1032, gnl|loxAfr1|scaffold_21045 (16500-16387) | |
| 877-1032, gnl|mm7|chr8 (122523968-122524081) | |
| 877-1032, gnl|Mm7|chr8 (122524127-122523971) | |
| 877-1032, gnl|monDom2|scaffold_13 (57418691-57418804) | |
| 877-1032, gnl|oryCun1|scaffold_140199 (16175-16288) | |
| 877-1032, gnl|panTro1|chr1 (209775843-209775956) | |
| 877-1032, gnl|rheMac2|chr1 (227459481-227459368) | |
| 877-1032, gnl|rn3|chr19 (54133691-54133804) | |
| 877-1032, gnl|tetNig1|chr18 (10008564-10008451) |