Non-Coding RNA Search

Ss1.1-Pig3-SRG8002N10.5

Sequence:


               
               CGACCGCCGGAGCATGCGCATCGAGGTCACGTGCAACCACTGCGCCCGCCGCCTGGTTTT
CTTCAACAAGTGCAGCCTCTTGCTGCACGCCCGTGAGCACAAGGACAAGGGGCTCGTCAT
GCAGTGCTCGCACCTGGTCATGAGGCCGGTGGCCCTTGACCAGATGGTGGGGCAGCCGGA
CATCACGCCCCTGCTGGCGGTCCCACCTGCCCTTGGACCTCCAGCCTTGCCTGCCTTGGG
CAAAGGTGACGGGGCCGTCACCTCAGTCGCCGTTACTGCAGTTGCTGCTGAGGCCCCTGT
GCTGCCACTCTCCATCGAGCCGCCTGCTGCCCCGGCCACCTCTTCTTACACGTGCTTCCG
CTGCCTGGAGTGCAAGGAGCAGTGCCGGGACAAGGATGGTATGGCCGCCCACTTCCAGCA
GCTCGGACCACCTGCCCCTGGGGCCACCAGCAATGTGTGCCCAACCTGCCCCATGATGCT
CCCCAATCGCTGCAGCTTCGGCGCCCACCAGCGCATGCATAAGAACCGACCTCCCCACGT
CTGCCCTGAGTGTGGAGGCAACTTTCTGCAAGCCAACTTTCAGACCCACCTCCGGGAGGC
CTGTCTGCATTTCTCTCGCCGCGTAGGATACAGGTGCCCCAGCTGTGCCGTGGTGTTTGG
GGGTGTGAACTCCATCAAGTCCCACATCCAGACGTCACACTGCGAGGTTTTCCACAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACCGCCGGAGCATGCGCATCGAGGTCACGTGCAACCACTGCGCCCGCCGCCTGGTTTT
CTTCAACAAGTGCAGCCTCTTGCTGCACGCCCGTGAGCACAAGGACAAGGGGCTCGTCAT
GCAGTGCTCGCACCTGGTCATGAGGCCGGTGGCCCTTGACCAGATGGTGGGGCAGCCGGA
CATCACGCCCCTGCTGGCGGTCCCACCTGCCCTTGGACCTCCAGCCTTGCCTGCCTTGGG
CAAAGGTGACGGGGCCGTCACCTCAGTCGCCGTTACTGCAGTTGCTGCTGAGGCCCCTGT
GCTGCCACTCTCCATCGAGCCGCCTGCTGCCCCGGCCACCTCTTCTTACACGTGCTTCCG
CTGCCTGGAGTGCAAGGAGCAGTGCCGGGACAAGGATGGTATGGCCGCCCACTTCCAGCA
GCTCGGACCACCTGCCCCTGGGGCCACCAGCAATGTGTGCCCAACCTGCCCCATGATGCT
CCCCAATCGCTGCAGCTTCGGCGCCCACCAGCGCATGCATAAGAACCGACCTCCCCACGT
CTGCCCTGAGTGTGGAGGCAACTTTCTGCAAGCCAACTTTCAGACCCACCTCCGGGAGGC
CTGTCTGCATTTCTCTCGCCGCGTAGGATACAGGTGCCCCAGCTGTGCCGTGGTGTTTGG
GGGTGTGAACTCCATCAAGTCCCACATCCAGACGTCACACTGCGAGGTTTTCCACAAGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-274, - strand, RNAz p=0.989156
               

               
               315-434, - strand, RNAz p=0.541526

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-274, - strand, RNAz p=0.989156
               

               
               315-434, - strand, RNAz p=0.541526

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               97-216, - strand, RNAmicro p=0.99134
               

               
               103-234, + strand, RNAmicro p=0.967527

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               97-216, - strand, RNAmicro p=0.99134
               

               
               103-234, + strand, RNAmicro p=0.967527

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-457, gnl|bosTau2|chr3 (16263222-16262767)
               

               
               2-457, gnl|Hg17|chr1 (148073497-148073958)
               

               
               2-457, gnl|Mm7|chr3 (94884752-94884291)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-457, gnl|bosTau2|chr3 (16263222-16262767)
               

               
               2-457, gnl|Hg17|chr1 (148073497-148073958)
               

               
               2-457, gnl|Mm7|chr3 (94884752-94884291)

	81-274, - strand, RNAz p=0.989156
	315-434, - strand, RNAz p=0.541526

	97-216, - strand, RNAmicro p=0.99134
	103-234, + strand, RNAmicro p=0.967527

	2-457, gnl\|bosTau2\|chr3 (16263222-16262767)
	2-457, gnl\|Hg17\|chr1 (148073497-148073958)
	2-457, gnl\|Mm7\|chr3 (94884752-94884291)