Non-Coding RNA Search

Ss1.1-Pig3-SRG8002O22.5

Sequence:


               
               GGATCAGTGTAATGTGGGCTTCATAAGAGCAGACCTGCAAGTCAGAGACCTTGACTTTGA
ACGTATTCAGTTTTACCACCACATAAAAGAAAAGGCGGCTATCATGAAGCCTGCAGCGTT
CATAGAAGTGATATTGGAAAAGGACACACAGAAAGCAAAAATATCCTATTTTAGCCATGG
GACATAAAGAAATGTCATCAATTTGTATTAATTATAAGTAATATCTATTTAATTAGCCCC
ATTGTATTTATATTCATTTTTTGAAAGGTCTTATATTTATGTATCTTAAGACAATAATAT
AGCCTATAAAATATAAAAATCTAATAGTTAAAATCTGTATCAGAGAAAAAACATTATTGT
TATATTATTTGTACACATACTATTTAATTGGTTTTACTACTAACTGCCACTGTTAACTAA
TCCTGTTATTTTTCTTAAATAACAGTGTTTATGTAACAGAATAGCAAGTAATACAGAATA
CATATAATCTAAACACCTAATTTATATTTTATGTTAAAATAATAATATGTGTATATAAGT
ATTTATTACATATTGTGCCAATTTTTTGGTCTCGTATAGCTGTGTCCTAAGTTGGCTGTC
TAAAAAGTTCATCTACGTACACATAGATGTCCTTCACAGAGCCTGACATGCAGAATTTGG
CTCTGAATTGTTTGACAGTTATTGGACAGGTATTTCTACTGGTTACTGTTTTTTTGAACC
AGTTTAATCTAAAGGCCTCCGGAAGAAATATGTACTAATATATTTCATGTGTCTGAATGA
GACAATGACAGATTAATTGAAGATAAATTCAGTTAAGCTAGTCATTAAAAATATAAATGA
GGTAATTGTCAAGAAAGTAAAAAGCTTTGTTAACCTTAAAATCTAAGTTCAGAAGTCCTA
TGATATATTCTCTTTTTTAGCAAAAATACCTGGACAAGCCCCTTCTTGGCTTCTAAAAAG
ATATTTGAGGTAGGAGATTACCTACTTCTTTTATTCTGTCTTATAAGATTCTGATTTTGA
ATTAAAGTAATATGTAAAAGTGACTTTTTAAAAAAATTTTTATTATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCAGTGTAATGTGGGCTTCATAAGAGCAGACCTGCAAGTCAGAGACCTTGACTTTGA
ACGTATTCAGTTTTACCACCACATAAAAGAAAAGGCGGCTATCATGAAGCCTGCAGCGTT
CATAGAAGTGATATTGGAAAAGGACACACAGAAAGCAAAAATATCCTATTTTAGCCATGG
GACATAAAGAAATGTCATCAATTTGTATTAATTATAAGTAATATCTATTTAATTAGCCCC
ATTGTATTTATATTCATTTTTTGAAAGGTCTTATATTTATGTATCTTAAGACAATAATAT
AGCCTATAAAATATAAAAATCTAATAGTTAAAATCTGTATCAGAGAAAAAACATTATTGT
TATATTATTTGTACACATACTATTTAATTGGTTTTACTACTAACTGCCACTGTTAACTAA
TCCTGTTATTTTTCTTAAATAACAGTGTTTATGTAACAGAATAGCAAGTAATACAGAATA
CATATAATCTAAACACCTAATTTATATTTTATGTTAAAATAATAATATGTGTATATAAGT
ATTTATTACATATTGTGCCAATTTTTTGGTCTCGTATAGCTGTGTCCTAAGTTGGCTGTC
TAAAAAGTTCATCTACGTACACATAGATGTCCTTCACAGAGCCTGACATGCAGAATTTGG
CTCTGAATTGTTTGACAGTTATTGGACAGGTATTTCTACTGGTTACTGTTTTTTTGAACC
AGTTTAATCTAAAGGCCTCCGGAAGAAATATGTACTAATATATTTCATGTGTCTGAATGA
GACAATGACAGATTAATTGAAGATAAATTCAGTTAAGCTAGTCATTAAAAATATAAATGA
GGTAATTGTCAAGAAAGTAAAAAGCTTTGTTAACCTTAAAATCTAAGTTCAGAAGTCCTA
TGATATATTCTCTTTTTTAGCAAAAATACCTGGACAAGCCCCTTCTTGGCTTCTAAAAAG
ATATTTGAGGTAGGAGATTACCTACTTCTTTTATTCTGTCTTATAAGATTCTGATTTTGA
ATTAAAGTAATATGTAAAAGTGACTTTTTAAAAAAATTTTTATTATGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               718-872, - strand, RNAz p=0.830166

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               718-872, - strand, RNAz p=0.830166

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               49-977, gnl|bosTau2|chr4 (54178718-54179646)
               

               
               49-977, gnl|Hg17|chr7 (134240693-134241589)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-977, gnl|bosTau2|chr4 (54178718-54179646)
               

               
               49-977, gnl|Hg17|chr7 (134240693-134241589)

	49-977, gnl\|bosTau2\|chr4 (54178718-54179646)
	49-977, gnl\|Hg17\|chr7 (134240693-134241589)