Non-Coding RNA Search

Ss1.1-Pig3-SRG8002P01.5

Sequence:


               
               GCGGCTCGAGAACACTTCTGGGTTCCCAGAGCCTGCAGGAGAAAGCCCAGGTTCCTAAAT
CTGCTTGTTGAGATGTGGCAGCTGCCCACATCATCCCTCAGCCCATTGCTTCCTTCCCTG
CCTATTGTAACCATTCATGCCCCCTCTCCCTCCGCCCAGTAAGGACCCCCTCTTGGTCCC
TGAACACCAGGTGCTGTTTTGTGTCTGCTTGTCTTTATGCTCCCACCTCAGGTCCCTCTG
ATTGCTTTCTAGTCACCTTAGAACTTCATTGCCTCAAACCCTCTATCCCCAGTCCTGCCC
CAAAGCCGAGTTTACCTCCTCTTTGTGTGGCCGTCGTACTCCATACACACCGTATTGTAA
TTCTATAGTTCTGTCTCCTTCACAAGAATATGAGCTCCATGAATTTGGGGACAATGCTTA
TCTTGTTCTCTTCTCATCCTCAGCACCCAGCATGTAGTGGGTGCTCCATAAATGCTTGTT
GGATGAATATATATCTCTCTCATCATACTCACTCCATCAAGTTGAAATATTTGTGTGTTT
CTCCTCTCTTAGTGAGATCCTTAAAGACAGTGATCTTGTCTTAATCTTCCCTGTATCTCC
AGTCCCTAGCCCAGTACTTGATGTATGCATGGGGAACAAGCAGTAAATGGGGAGAAGAAA
AAATCTTTATAACCTCCAACTGTTCACTGGTCTTACTCCCCACCCCCACCATCTTGCTGT
CTTTTCTTTTATTCTCACGTTTTTAACATAAAAATTTTCAGACATAAAATCTGAAAGAGT
AGTAATGTGAGCATTTGTATACCTGCTATCTAGATTAAACAGTTGTTAGCATTTTGCCAT
ATTTATTTGATGGATATATGATGCGTGTGGTTTTTCCTGAACTATTTGAAAGTGTGTTGT
ACACAAGACTGATGCCCTAAGTACTTCATATTGTAGTTCTTAATAATGACATTCTCCTAT
AAAAATCATAATACTATTATTGCAACTAAGAAAATTAACAATAATTCCCTAATATAATAC
CTAAAATAACCTATAGCCAACTTCCACAGTCATGGTTCCCCCAGTTGTGCCACATTCTGA
TGTTATAGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGAACACTTCTGGGTTCCCAGAGCCTGCAGGAGAAAGCCCAGGTTCCTAAAT
CTGCTTGTTGAGATGTGGCAGCTGCCCACATCATCCCTCAGCCCATTGCTTCCTTCCCTG
CCTATTGTAACCATTCATGCCCCCTCTCCCTCCGCCCAGTAAGGACCCCCTCTTGGTCCC
TGAACACCAGGTGCTGTTTTGTGTCTGCTTGTCTTTATGCTCCCACCTCAGGTCCCTCTG
ATTGCTTTCTAGTCACCTTAGAACTTCATTGCCTCAAACCCTCTATCCCCAGTCCTGCCC
CAAAGCCGAGTTTACCTCCTCTTTGTGTGGCCGTCGTACTCCATACACACCGTATTGTAA
TTCTATAGTTCTGTCTCCTTCACAAGAATATGAGCTCCATGAATTTGGGGACAATGCTTA
TCTTGTTCTCTTCTCATCCTCAGCACCCAGCATGTAGTGGGTGCTCCATAAATGCTTGTT
GGATGAATATATATCTCTCTCATCATACTCACTCCATCAAGTTGAAATATTTGTGTGTTT
CTCCTCTCTTAGTGAGATCCTTAAAGACAGTGATCTTGTCTTAATCTTCCCTGTATCTCC
AGTCCCTAGCCCAGTACTTGATGTATGCATGGGGAACAAGCAGTAAATGGGGAGAAGAAA
AAATCTTTATAACCTCCAACTGTTCACTGGTCTTACTCCCCACCCCCACCATCTTGCTGT
CTTTTCTTTTATTCTCACGTTTTTAACATAAAAATTTTCAGACATAAAATCTGAAAGAGT
AGTAATGTGAGCATTTGTATACCTGCTATCTAGATTAAACAGTTGTTAGCATTTTGCCAT
ATTTATTTGATGGATATATGATGCGTGTGGTTTTTCCTGAACTATTTGAAAGTGTGTTGT
ACACAAGACTGATGCCCTAAGTACTTCATATTGTAGTTCTTAATAATGACATTCTCCTAT
AAAAATCATAATACTATTATTGCAACTAAGAAAATTAACAATAATTCCCTAATATAATAC
CTAAAATAACCTATAGCCAACTTCCACAGTCATGGTTCCCCCAGTTGTGCCACATTCTGA
TGTTATAGCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               10-128, - strand, RNAz p=0.997052

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-128, - strand, RNAz p=0.997052

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               10-1002, gnl|bosTau2|chr10 (11278405-11277419)
               

               
               10-1002, gnl|Hg17|chr15 (68931499-68930504)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1002, gnl|bosTau2|chr10 (11278405-11277419)
               

               
               10-1002, gnl|Hg17|chr15 (68931499-68930504)

	10-1002, gnl\|bosTau2\|chr10 (11278405-11277419)
	10-1002, gnl\|Hg17\|chr15 (68931499-68930504)