Non-Coding RNA Search

Ss1.1-Pig3-SRG8002P17.3

Sequence:


               
               ACACACTCGGGGAGCGGGAGCGCGGCGCGGACGCCGAGCCGCCGGGGCTGCTGCGCCCAG
AGCCAGCCGGAGCCGGAGCCGGAACCGCAGCGCCAGCCCGAGGGAGCCGCAGCCCGGGCC
GGGGCCGGGGGCGGCTCATGGACTGCAGGGCCCGCGGCCGGCGCTGCCCCGAGACGGCCT
TCCTGACCCTGGAGCCTGCCCGGATGGGGCCCCCGAGGCGCAGCCCAGGCCCGGCGGGGC
ACCGGCTGCTGCTGGCCCCCTTGCTGCTGGCCCTGCTGCTCCTGCTGGCTCCATCCCCCG
GCCACGCCACTCGGGTGGTGTACAAGGTGCCGGAGGAGCAGCCGCCCAACACCCTCATCG
GGAGCCTCGCGGCCGACTACGGCTTTCCAGACGTGGGCCACCTGTACAAACTAGAGGTAG
GCGCCCCGTACCTGCGGGTGGATGGCAAGACGGGCGACATCTTCACCACCGCGACCTCTA
TCGACCGCGAGGGGCTCCGCGAGTGCCAGAACCAGCTCCCCGGGGAGCCGTGCATCCTGG
AGTTTGAGGTGTCCATCACGGACCTCGTGCAGAACGGCAGCCCCCGGCTGCTGGAGGGCC
AGATAGAGGTACAGGACATCAACGACAACACGCCCAACTTCGCCTCGCCGGTCATCACGC
TGCCCATCCCCGAGAACACAAACATCGGCTCCCTCTTCTCCATCCCAGTGGCTTCGGACC
GGGATGCTGGCCCCAACGGCGTGGCATCATACGAGCTGCAGGCCGGGCCCGAGGCCCAGG
AGCTGTTTGGGCTGCAGGTGGCAGAGGACCAGGAGGGGAAGCAGCCACAGCTCATCGTGA
TGGGCAACCTGGACCGGGAGCGCTGGGACTCTTACGACCTGACCATCAAGGTGCAGGATG
GTGGCAACCCGCCGCGTGCCAGCAGCGCCCTGATGCGCGTCACTGTGCTCGACACCAATG
ACAACGCCCCCAAGTTCGAGCGGCCCTCCTACGAGGCCGAGCTGTCTGAGAACAGCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACACTCGGGGAGCGGGAGCGCGGCGCGGACGCCGAGCCGCCGGGGCTGCTGCGCCCAG
AGCCAGCCGGAGCCGGAGCCGGAACCGCAGCGCCAGCCCGAGGGAGCCGCAGCCCGGGCC
GGGGCCGGGGGCGGCTCATGGACTGCAGGGCCCGCGGCCGGCGCTGCCCCGAGACGGCCT
TCCTGACCCTGGAGCCTGCCCGGATGGGGCCCCCGAGGCGCAGCCCAGGCCCGGCGGGGC
ACCGGCTGCTGCTGGCCCCCTTGCTGCTGGCCCTGCTGCTCCTGCTGGCTCCATCCCCCG
GCCACGCCACTCGGGTGGTGTACAAGGTGCCGGAGGAGCAGCCGCCCAACACCCTCATCG
GGAGCCTCGCGGCCGACTACGGCTTTCCAGACGTGGGCCACCTGTACAAACTAGAGGTAG
GCGCCCCGTACCTGCGGGTGGATGGCAAGACGGGCGACATCTTCACCACCGCGACCTCTA
TCGACCGCGAGGGGCTCCGCGAGTGCCAGAACCAGCTCCCCGGGGAGCCGTGCATCCTGG
AGTTTGAGGTGTCCATCACGGACCTCGTGCAGAACGGCAGCCCCCGGCTGCTGGAGGGCC
AGATAGAGGTACAGGACATCAACGACAACACGCCCAACTTCGCCTCGCCGGTCATCACGC
TGCCCATCCCCGAGAACACAAACATCGGCTCCCTCTTCTCCATCCCAGTGGCTTCGGACC
GGGATGCTGGCCCCAACGGCGTGGCATCATACGAGCTGCAGGCCGGGCCCGAGGCCCAGG
AGCTGTTTGGGCTGCAGGTGGCAGAGGACCAGGAGGGGAAGCAGCCACAGCTCATCGTGA
TGGGCAACCTGGACCGGGAGCGCTGGGACTCTTACGACCTGACCATCAAGGTGCAGGATG
GTGGCAACCCGCCGCGTGCCAGCAGCGCCCTGATGCGCGTCACTGTGCTCGACACCAATG
ACAACGCCCCCAAGTTCGAGCGGCCCTCCTACGAGGCCGAGCTGTCTGAGAACAGCCCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|30411049|gb|AAH51287.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30411049|gb|AAH51287.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               247-366, - strand, RNAz p=0.679707
               

               
               727-846, - strand, RNAz p=0.907939

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-366, - strand, RNAz p=0.679707
               

               
               727-846, - strand, RNAz p=0.907939

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               167-1020, gnl|bosTau2|chr7 (35720251-35719398)
               

               
               167-1020, gnl|Hg17|chr5 (141229191-141228338)
               

               
               167-1020, gnl|Mm7|chr18 (38579815-38578965)
               


               
               601-1019, gnl|bosTau2|chr12 (775196-775610)
               

               
               601-1019, gnl|canFam2|chr22 (16810724-16811027)
               

               
               601-1019, gnl|danRer3|chr11 (32654182-32653879)
               

               
               601-1019, gnl|dasNov1|scaffold_20066 (3219-2912)
               

               
               601-1019, gnl|echTel1|scaffold_310484 (131394-131688)
               

               
               601-1019, gnl|fr1|chrUn (75679451-75679754)
               

               
               601-1019, gnl|galGal2|chr1 (155721919-155721616)
               

               
               601-1019, gnl|hg17|chr13 (57105005-57105308)
               

               
               601-1019, gnl|Hg17|chr13 (57105037-57105451)
               

               
               601-1019, gnl|loxAfr1|scaffold_2020 (77783-78086)
               

               
               601-1019, gnl|mm7|chr14 (79122775-79123078)
               

               
               601-1019, gnl|Mm7|chr14 (79122807-79123221)
               

               
               601-1019, gnl|monDom2|scaffold_47 (10305824-10305521)
               

               
               601-1019, gnl|oryCun1|scaffold_214996 (129000-128697)
               

               
               601-1019, gnl|rheMac2|chr17 (36651758-36652061)
               

               
               601-1019, gnl|rn3|chr15 (66408278-66408581)
               

               
               601-1019, gnl|tetNig1|chr2 (10492385-10492688)
               

               
               601-1019, gnl|xenTro1|scaffold_515 (193568-193871)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-1020, gnl|bosTau2|chr7 (35720251-35719398)
               

               
               167-1020, gnl|Hg17|chr5 (141229191-141228338)
               

               
               167-1020, gnl|Mm7|chr18 (38579815-38578965)
               


               
               601-1019, gnl|bosTau2|chr12 (775196-775610)
               

               
               601-1019, gnl|canFam2|chr22 (16810724-16811027)
               

               
               601-1019, gnl|danRer3|chr11 (32654182-32653879)
               

               
               601-1019, gnl|dasNov1|scaffold_20066 (3219-2912)
               

               
               601-1019, gnl|echTel1|scaffold_310484 (131394-131688)
               

               
               601-1019, gnl|fr1|chrUn (75679451-75679754)
               

               
               601-1019, gnl|galGal2|chr1 (155721919-155721616)
               

               
               601-1019, gnl|hg17|chr13 (57105005-57105308)
               

               
               601-1019, gnl|Hg17|chr13 (57105037-57105451)
               

               
               601-1019, gnl|loxAfr1|scaffold_2020 (77783-78086)
               

               
               601-1019, gnl|mm7|chr14 (79122775-79123078)
               

               
               601-1019, gnl|Mm7|chr14 (79122807-79123221)
               

               
               601-1019, gnl|monDom2|scaffold_47 (10305824-10305521)
               

               
               601-1019, gnl|oryCun1|scaffold_214996 (129000-128697)
               

               
               601-1019, gnl|rheMac2|chr17 (36651758-36652061)
               

               
               601-1019, gnl|rn3|chr15 (66408278-66408581)
               

               
               601-1019, gnl|tetNig1|chr2 (10492385-10492688)
               

               
               601-1019, gnl|xenTro1|scaffold_515 (193568-193871)

	247-366, - strand, RNAz p=0.679707
	727-846, - strand, RNAz p=0.907939

	167-1020, gnl\|bosTau2\|chr7 (35720251-35719398)
	167-1020, gnl\|Hg17\|chr5 (141229191-141228338)
	167-1020, gnl\|Mm7\|chr18 (38579815-38578965)

	601-1019, gnl\|bosTau2\|chr12 (775196-775610)
	601-1019, gnl\|canFam2\|chr22 (16810724-16811027)
	601-1019, gnl\|danRer3\|chr11 (32654182-32653879)
	601-1019, gnl\|dasNov1\|scaffold_20066 (3219-2912)
	601-1019, gnl\|echTel1\|scaffold_310484 (131394-131688)
	601-1019, gnl\|fr1\|chrUn (75679451-75679754)
	601-1019, gnl\|galGal2\|chr1 (155721919-155721616)
	601-1019, gnl\|hg17\|chr13 (57105005-57105308)
	601-1019, gnl\|Hg17\|chr13 (57105037-57105451)
	601-1019, gnl\|loxAfr1\|scaffold_2020 (77783-78086)
	601-1019, gnl\|mm7\|chr14 (79122775-79123078)
	601-1019, gnl\|Mm7\|chr14 (79122807-79123221)
	601-1019, gnl\|monDom2\|scaffold_47 (10305824-10305521)
	601-1019, gnl\|oryCun1\|scaffold_214996 (129000-128697)
	601-1019, gnl\|rheMac2\|chr17 (36651758-36652061)
	601-1019, gnl\|rn3\|chr15 (66408278-66408581)
	601-1019, gnl\|tetNig1\|chr2 (10492385-10492688)
	601-1019, gnl\|xenTro1\|scaffold_515 (193568-193871)