Non-Coding RNA Search

Ss1.1-Pig3-SRG8003B23.5

Sequence:


               
               AGAGAACCTAGCTCCCGTGAAGAACCAGTTCCAGATCCAAGAGGAGGAGGAGACCCTGCA
GGATGAGGAGGTCTGGGATGCTCTGACAGACAATTACATCCCTTCACTCTCGGAAGACTG
GAGGGACCCAAACATGGAGGCTCTGAATGGCAATGGCTCTGACACTGAGATCCATGAGAA
GGAAGAGGAAGAGTTCAATGAGAAGAGTGAACATGATTCTGGTATCAACGAGGAGCCTCT
ACTCACAGCAGATCAGGTACAAATCTTTCTTGGTTCATGGAACTTTCTGTTCTTTTGACA
GTGAGAAAGTCAGAGTACACACTTGTCCACATCCCATTCAGGTGATAGAAAAATGTATGG
CCTATTTGTGGCTGTGTCGATAACTTAAGGTGTCTTTGATAAAGGATTCATGTCTCTTTA
TGCCTCGCTTTACCCGCCTGCAGTAAATAGGAATATAATTCCTGATGTGTGTGTTTGATG
GGTCTGTGTTTGGTATGAGCCATATACAGGCACAGGGCCTACCGCCCTCATTTCCTGCTA
AGCCTCTTAATTGCAACTCATTGTGCTTGGAGTCAAGACTTTTATTCAACAAGGGTTCCA
AATAAGTGTTCTCACAAGAATAGAAATGGCAGATGAGGCTTTCAAGTGGTGGATATTTTC
TCATATTTCATAGAACACTGAAAATGTTGAGCCTTCCAAAGGGAATCTTAGAGACACTCA
TTTGTATATATATTGCTTCACATTTTATTGTTACTTATGTTTTGAGTTTAATAATTTGTT
ACTTAGGGAGATTATTCCTGGGTCTCTGGATTCCTTAGCCTTTCAGTCAACAAAAAGTTA
TGAGAGCTTGTCTTTTTAAAAATTTTAAATTTATTT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AGTGTTTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAACCTAGCTCCCGTGAAGAACCAGTTCCAGATCCAAGAGGAGGAGGAGACCCTGCA
GGATGAGGAGGTCTGGGATGCTCTGACAGACAATTACATCCCTTCACTCTCGGAAGACTG
GAGGGACCCAAACATGGAGGCTCTGAATGGCAATGGCTCTGACACTGAGATCCATGAGAA
GGAAGAGGAAGAGTTCAATGAGAAGAGTGAACATGATTCTGGTATCAACGAGGAGCCTCT
ACTCACAGCAGATCAGGTACAAATCTTTCTTGGTTCATGGAACTTTCTGTTCTTTTGACA
GTGAGAAAGTCAGAGTACACACTTGTCCACATCCCATTCAGGTGATAGAAAAATGTATGG
CCTATTTGTGGCTGTGTCGATAACTTAAGGTGTCTTTGATAAAGGATTCATGTCTCTTTA
TGCCTCGCTTTACCCGCCTGCAGTAAATAGGAATATAATTCCTGATGTGTGTGTTTGATG
GGTCTGTGTTTGGTATGAGCCATATACAGGCACAGGGCCTACCGCCCTCATTTCCTGCTA
AGCCTCTTAATTGCAACTCATTGTGCTTGGAGTCAAGACTTTTATTCAACAAGGGTTCCA
AATAAGTGTTCTCACAAGAATAGAAATGGCAGATGAGGCTTTCAAGTGGTGGATATTTTC
TCATATTTCATAGAACACTGAAAATGTTGAGCCTTCCAAAGGGAATCTTAGAGACACTCA
TTTGTATATATATTGCTTCACATTTTATTGTTACTTATGTTTTGAGTTTAATAATTTGTT
ACTTAGGGAGATTATTCCTGGGTCTCTGGATTCCTTAGCCTTTCAGTCAACAAAAAGTTA
TGAGAGCTTGTCTTTTTAAAAATTTTAAATTTATTT------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AGTGTTTTTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               446-547, - strand, RNAz p=0.9976

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               446-547, - strand, RNAz p=0.9976

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               168-855, gnl|bosTau2|chr29 (22567498-22568217)
               

               
               168-855, gnl|Hg17|chr11 (124838678-124837342)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-855, gnl|bosTau2|chr29 (22567498-22568217)
               

               
               168-855, gnl|Hg17|chr11 (124838678-124837342)

	168-855, gnl\|bosTau2\|chr29 (22567498-22568217)
	168-855, gnl\|Hg17\|chr11 (124838678-124837342)