Non-Coding RNA Search

Ss1.1-Pig3-SRG8003C09.5

Sequence:


               
               AGCGCTTCCGGTCCGGGATCCTGGCGGCCAGAGCTGCAACGGCGGCGGTGGCGGCGGCGG
CCGGTGCGCTGGGATGGCTGGCGCCGGGAGCGAAGCTCGGTTCGCCGGGCTGTCACTGAT
GCAGCTCAACGAGCTGCTGGAAGACGAGGGGCAGCTGACAGAGATGGTGCAGAAGATGGA
GGAGACGCAGAACGTTCAGCTTAATAAAGAAATGACGCTGGCCAGCAACCGGAGCCTGGC
GGAAGGCAACCTTCTGTACCAGCCCCAGCTGGACTCTCTGAAAGCACGTTTGACCCAAAA
GTACCAGGAACTCCAGGTGCTCTTTGAAGCCTATCAGATAAAGAAGACCAAATTAGATAA
GCAATCCAGCAGTGCTTCCTTGGAGACCCTGTTAGCACTTCTGCAGGCAGAAGGGGCCAA
GATCGAGGAAGACACAGAGAATATGGCAGAGAAGTTTCTTGATGGAGAGCTTCCTCTGGA
CTCCTTCATTGATGTCTATCAGAACAAGAGGAAACTGGCCCACATGCGAAGAGTTAAAAT
CGAGAAGCTCCAGGAGATGGTGCTGAAGGGGCGGAGACTTCCCCAGGCCCCAGCGCCTGC
CCCACTGCCACCCAGGGTGCCCGAGCCGGTGCCGGCTGTGCCCCTGCCCTACCCCACCCC
AGAGGCCAGCGGGCCCCCCTCCGTCATGCCTCGGCGCATCCCGCCCCCACCACCCCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCTTCCGGTCCGGGATCCTGGCGGCCAGAGCTGCAACGGCGGCGGTGGCGGCGGCGG
CCGGTGCGCTGGGATGGCTGGCGCCGGGAGCGAAGCTCGGTTCGCCGGGCTGTCACTGAT
GCAGCTCAACGAGCTGCTGGAAGACGAGGGGCAGCTGACAGAGATGGTGCAGAAGATGGA
GGAGACGCAGAACGTTCAGCTTAATAAAGAAATGACGCTGGCCAGCAACCGGAGCCTGGC
GGAAGGCAACCTTCTGTACCAGCCCCAGCTGGACTCTCTGAAAGCACGTTTGACCCAAAA
GTACCAGGAACTCCAGGTGCTCTTTGAAGCCTATCAGATAAAGAAGACCAAATTAGATAA
GCAATCCAGCAGTGCTTCCTTGGAGACCCTGTTAGCACTTCTGCAGGCAGAAGGGGCCAA
GATCGAGGAAGACACAGAGAATATGGCAGAGAAGTTTCTTGATGGAGAGCTTCCTCTGGA
CTCCTTCATTGATGTCTATCAGAACAAGAGGAAACTGGCCCACATGCGAAGAGTTAAAAT
CGAGAAGCTCCAGGAGATGGTGCTGAAGGGGCGGAGACTTCCCCAGGCCCCAGCGCCTGC
CCCACTGCCACCCAGGGTGCCCGAGCCGGTGCCGGCTGTGCCCCTGCCCTACCCCACCCC
AGAGGCCAGCGGGCCCCCCTCCGTCATGCCTCGGCGCATCCCGCCCCCACCACCCCCAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61882837|ref|XP_615672.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882837|ref|XP_615672.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-342, - strand, RNAz p=0.697443

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-342, - strand, RNAz p=0.697443

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               183-360, gnl|bosTau2|chr17 (28312671-28312494)
               

               
               183-360, gnl|canFam2|chr26 (9634090-9633870)
               

               
               183-360, gnl|danRer3|chrNA (199230744-199230547)
               

               
               183-360, gnl|dasNov1|scaffold_26926 (5041-4820)
               

               
               183-360, gnl|echTel1|scaffold_315597 (47131-46912)
               

               
               183-360, gnl|fr1|chrUn (207734335-207734146)
               

               
               183-360, gnl|galGal2|chr15 (5201635-5201445)
               

               
               183-360, gnl|hg17|chr12 (121880288-121880511)
               

               
               183-360, gnl|Hg17|chr12 (121880490-121880313)
               

               
               183-360, gnl|mm7|chr5 (123256502-123256727)
               

               
               183-360, gnl|Mm7|chr5 (123256706-123256529)
               

               
               183-360, gnl|monDom2|scaffold_97 (3235525-3235746)
               

               
               183-360, gnl|oryCun1|scaffold_167956 (798-575)
               

               
               183-360, gnl|panTro1|chr10 (124959449-124959672)
               

               
               183-360, gnl|rheMac2|chr11 (124130471-124130694)
               

               
               183-360, gnl|rn3|chr12 (33570447-33570225)
               

               
               183-360, gnl|tetNig1|chr12 (12160834-12161026)
               

               
               183-360, gnl|xenTro1|scaffold_100 (1765130-1765327)
               


               
               438-720, gnl|bosTau2|chr17 (28310148-28309866)
               

               
               438-720, gnl|Hg17|chr12 (121877036-121876760)
               

               
               438-720, gnl|Mm7|chr5 (123252585-123252309)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-360, gnl|bosTau2|chr17 (28312671-28312494)
               

               
               183-360, gnl|canFam2|chr26 (9634090-9633870)
               

               
               183-360, gnl|danRer3|chrNA (199230744-199230547)
               

               
               183-360, gnl|dasNov1|scaffold_26926 (5041-4820)
               

               
               183-360, gnl|echTel1|scaffold_315597 (47131-46912)
               

               
               183-360, gnl|fr1|chrUn (207734335-207734146)
               

               
               183-360, gnl|galGal2|chr15 (5201635-5201445)
               

               
               183-360, gnl|hg17|chr12 (121880288-121880511)
               

               
               183-360, gnl|Hg17|chr12 (121880490-121880313)
               

               
               183-360, gnl|mm7|chr5 (123256502-123256727)
               

               
               183-360, gnl|Mm7|chr5 (123256706-123256529)
               

               
               183-360, gnl|monDom2|scaffold_97 (3235525-3235746)
               

               
               183-360, gnl|oryCun1|scaffold_167956 (798-575)
               

               
               183-360, gnl|panTro1|chr10 (124959449-124959672)
               

               
               183-360, gnl|rheMac2|chr11 (124130471-124130694)
               

               
               183-360, gnl|rn3|chr12 (33570447-33570225)
               

               
               183-360, gnl|tetNig1|chr12 (12160834-12161026)
               

               
               183-360, gnl|xenTro1|scaffold_100 (1765130-1765327)
               


               
               438-720, gnl|bosTau2|chr17 (28310148-28309866)
               

               
               438-720, gnl|Hg17|chr12 (121877036-121876760)
               

               
               438-720, gnl|Mm7|chr5 (123252585-123252309)

	183-360, gnl\|bosTau2\|chr17 (28312671-28312494)
	183-360, gnl\|canFam2\|chr26 (9634090-9633870)
	183-360, gnl\|danRer3\|chrNA (199230744-199230547)
	183-360, gnl\|dasNov1\|scaffold_26926 (5041-4820)
	183-360, gnl\|echTel1\|scaffold_315597 (47131-46912)
	183-360, gnl\|fr1\|chrUn (207734335-207734146)
	183-360, gnl\|galGal2\|chr15 (5201635-5201445)
	183-360, gnl\|hg17\|chr12 (121880288-121880511)
	183-360, gnl\|Hg17\|chr12 (121880490-121880313)
	183-360, gnl\|mm7\|chr5 (123256502-123256727)
	183-360, gnl\|Mm7\|chr5 (123256706-123256529)
	183-360, gnl\|monDom2\|scaffold_97 (3235525-3235746)
	183-360, gnl\|oryCun1\|scaffold_167956 (798-575)
	183-360, gnl\|panTro1\|chr10 (124959449-124959672)
	183-360, gnl\|rheMac2\|chr11 (124130471-124130694)
	183-360, gnl\|rn3\|chr12 (33570447-33570225)
	183-360, gnl\|tetNig1\|chr12 (12160834-12161026)
	183-360, gnl\|xenTro1\|scaffold_100 (1765130-1765327)

	438-720, gnl\|bosTau2\|chr17 (28310148-28309866)
	438-720, gnl\|Hg17\|chr12 (121877036-121876760)
	438-720, gnl\|Mm7\|chr5 (123252585-123252309)