Non-Coding RNA Search

Ss1.1-Pig3-SRG8003C12.3

Sequence:


               
               TGTTGATATCCATGGTTGGCACTGGCTGCTCTCAGTAATGTTAATTAATCATCAAGCAAC
AGTTCCCTGCTGTGTTCTTAACACTGAGTTATGAATTTTTTTTTAAAGGAGTACTGTAGT
ACTGAATATTCCTTTAAAGAAACTGCAGTGAGCCTATCTGCATTTTTAAAATTAAGGCTT
TTAAAATAGAAAGCTGATGCTTGATCTTGCACAATTTTTATGTCTAGTATGTATGTTTGA
GTGAGTGTGCAGTTGTGAAAGGTTAGAGAAAATTTGAGTCAGTGTTCTTTATAGTGTGAG
TCTTGTAAGTTAATATAGTCTATGCCCATCTCTTCCCTACCTGTTTAATATCTGTAAGAT
TTAAGATACAAATTTTTTGGAAGTTAGTTTCTTTGATAGAATGAAAGGAGAAAATAGTTC
ATTCCTGAGAGGCCCATAACAGATGATTATAGCCTGAGTTATATTGAAACTTTCTAAAGT
GAACAAACTGTCTTAAAAAAGTTTTGGTAAATTGCCCCATCCTTCCATCTGCTTTAAACC
CTGCGTTAGCTCATCTGTTCTGTACTGAATCTTCTATGAACACTGTAAGATTTCTCAAGA
TAAGAGTTCTGCCTACTATGATGGAAAATTGAAGTGGGTCAAAAAGAAAGAATTAGTTGT
TCAGTGAAGGGAAAAGGGGGGGAAAAAAAAGACAGGGTGCATAATCAAGGATTTTTTATT
TCTTCCCTTCTCTCTCATCTCCCTTCCACTCCTTCTTTTCCTCTTCCTCCATTCTGTACC
TCTATCCTGAAGAGAGGTTAGAGGAAAGCATCCCCGGTGGTCTGGCTGTTGACTGCGAGG
AAGTAAACAAAGGTGTAGCTCTCATAAGGTGGAAGTAGAAAGGAAGAAAAGCCCATAAAG
AATTCTTAAAAGCATTAGCAATCTAATGTGTCCCTGGGTAGAGGTTACTAGTATGCAGAA
GTTCACAGACACAGATTGATTATGTGGTTTTAGGAATTATAATTAGGCATTCTACCCACT
TTATAGAAGATTGTCTTCAAAGGTTTAAATCTTAAGAAACCTTTATAAAGCACTGATTAT
ACAAAAAAAAGTTATATACAGGTTCTGAATTTTTTCTTACCTAAATGAAAATTTTATTTA
TTTATTTTTTTCCTAAGGAAAAAGTCTTATATACCTTACCCTGCTGGAAGCCTCCTCATA
TAGTCTTTCTTTGTATGTGCCATGCAGGTTATTGAGAGCCCAATTAAGAATTTATGGGTT
AGAGAATGAATTATTATACCCTGTTCAAACAATTACTATTTGATATTTTAATTACAGTTA
ATCTGATTATTCAGGACTCTCCTTAATATTTATTAAGAAACCAAATTTTCTATAATAAGG
AGGCTGATTAGTGAATTGCCAAAAGGTCTTGTGGCCTGATGCCCAAGGGAAAATTGTATA
GTAAGCTTCTAATATGTGCTCTTGGAAGGACAGTAATTTTTCGTTTTGGTACTTTCAGAG
GTTGATTAGCTGCTCTGGTTTCATATAAAAATTGAAGAGAGTATAGCCAGTATTTTGGAG
ACTTAAGCTTTCTTAAAACATAACTGTTTGTGTGGGTAGCAGCTTAAATGGTGATTAAAA
ATACCAGGTCCTTCCATACATGCTGATGAACACAGAATGCAGATGAATTCTTTTAAAGGG
CAAGTATTATAAGTTAGCATGTATACTTTTTCATCCCTATCCCCGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGATATCCATGGTTGGCACTGGCTGCTCTCAGTAATGTTAATTAATCATCAAGCAAC
AGTTCCCTGCTGTGTTCTTAACACTGAGTTATGAATTTTTTTTTAAAGGAGTACTGTAGT
ACTGAATATTCCTTTAAAGAAACTGCAGTGAGCCTATCTGCATTTTTAAAATTAAGGCTT
TTAAAATAGAAAGCTGATGCTTGATCTTGCACAATTTTTATGTCTAGTATGTATGTTTGA
GTGAGTGTGCAGTTGTGAAAGGTTAGAGAAAATTTGAGTCAGTGTTCTTTATAGTGTGAG
TCTTGTAAGTTAATATAGTCTATGCCCATCTCTTCCCTACCTGTTTAATATCTGTAAGAT
TTAAGATACAAATTTTTTGGAAGTTAGTTTCTTTGATAGAATGAAAGGAGAAAATAGTTC
ATTCCTGAGAGGCCCATAACAGATGATTATAGCCTGAGTTATATTGAAACTTTCTAAAGT
GAACAAACTGTCTTAAAAAAGTTTTGGTAAATTGCCCCATCCTTCCATCTGCTTTAAACC
CTGCGTTAGCTCATCTGTTCTGTACTGAATCTTCTATGAACACTGTAAGATTTCTCAAGA
TAAGAGTTCTGCCTACTATGATGGAAAATTGAAGTGGGTCAAAAAGAAAGAATTAGTTGT
TCAGTGAAGGGAAAAGGGGGGGAAAAAAAAGACAGGGTGCATAATCAAGGATTTTTTATT
TCTTCCCTTCTCTCTCATCTCCCTTCCACTCCTTCTTTTCCTCTTCCTCCATTCTGTACC
TCTATCCTGAAGAGAGGTTAGAGGAAAGCATCCCCGGTGGTCTGGCTGTTGACTGCGAGG
AAGTAAACAAAGGTGTAGCTCTCATAAGGTGGAAGTAGAAAGGAAGAAAAGCCCATAAAG
AATTCTTAAAAGCATTAGCAATCTAATGTGTCCCTGGGTAGAGGTTACTAGTATGCAGAA
GTTCACAGACACAGATTGATTATGTGGTTTTAGGAATTATAATTAGGCATTCTACCCACT
TTATAGAAGATTGTCTTCAAAGGTTTAAATCTTAAGAAACCTTTATAAAGCACTGATTAT
ACAAAAAAAAGTTATATACAGGTTCTGAATTTTTTCTTACCTAAATGAAAATTTTATTTA
TTTATTTTTTTCCTAAGGAAAAAGTCTTATATACCTTACCCTGCTGGAAGCCTCCTCATA
TAGTCTTTCTTTGTATGTGCCATGCAGGTTATTGAGAGCCCAATTAAGAATTTATGGGTT
AGAGAATGAATTATTATACCCTGTTCAAACAATTACTATTTGATATTTTAATTACAGTTA
ATCTGATTATTCAGGACTCTCCTTAATATTTATTAAGAAACCAAATTTTCTATAATAAGG
AGGCTGATTAGTGAATTGCCAAAAGGTCTTGTGGCCTGATGCCCAAGGGAAAATTGTATA
GTAAGCTTCTAATATGTGCTCTTGGAAGGACAGTAATTTTTCGTTTTGGTACTTTCAGAG
GTTGATTAGCTGCTCTGGTTTCATATAAAAATTGAAGAGAGTATAGCCAGTATTTTGGAG
ACTTAAGCTTTCTTAAAACATAACTGTTTGTGTGGGTAGCAGCTTAAATGGTGATTAAAA
ATACCAGGTCCTTCCATACATGCTGATGAACACAGAATGCAGATGAATTCTTTTAAAGGG
CAAGTATTATAAGTTAGCATGTATACTTTTTCATCCCTATCCCCGCCA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               3-274, - strand, RNAz p=0.934808
               

               
               662-777, - strand, RNAz p=0.91868
               

               
               884-1000, + strand, RNAz p=0.834408
               

               
               1227-1342, - strand, RNAz p=0.999624

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-274, - strand, RNAz p=0.934808
               

               
               662-777, - strand, RNAz p=0.91868
               

               
               884-1000, + strand, RNAz p=0.834408
               

               
               1227-1342, - strand, RNAz p=0.999624

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_175866, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_175866, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-1727, gnl|bosTau2|chr3 (7220312-7222050)
               

               
               3-1727, gnl|Hg17|chr1 (159224418-159226087)
               

               
               3-1727, gnl|Mm7|chr1 (170175935-170174339)
               


               
               528-716, gnl|bosTau2|chr2 (78200536-78200724)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1727, gnl|bosTau2|chr3 (7220312-7222050)
               

               
               3-1727, gnl|Hg17|chr1 (159224418-159226087)
               

               
               3-1727, gnl|Mm7|chr1 (170175935-170174339)
               


               
               528-716, gnl|bosTau2|chr2 (78200536-78200724)

	3-274, - strand, RNAz p=0.934808
	662-777, - strand, RNAz p=0.91868
	884-1000, + strand, RNAz p=0.834408
	1227-1342, - strand, RNAz p=0.999624

	3-1727, gnl\|bosTau2\|chr3 (7220312-7222050)
	3-1727, gnl\|Hg17\|chr1 (159224418-159226087)
	3-1727, gnl\|Mm7\|chr1 (170175935-170174339)

	528-716, gnl\|bosTau2\|chr2 (78200536-78200724)