Non-Coding RNA Search

Ss1.1-Pig3-SRG8003D08.5

Sequence:


               
               CTCAGTTAGGGCCTGTCCGCGGCCGCGAGGGCGCCAGAGCTTGTTAGTTTCTCGACCGAT
GTTCCCGGGAAGCGTAACTGGAGTGCGGCAGGCGGCTGCGGCCAGGCGGGCCTGGGGGCG
GGCGCCTTGGCCCTGTGTTCATATCTAGGGACCGAAATGGAGGAGCGCGTGCATCTTTGT
CTGGCAGGGTTCCGCGGTCTGGGAACCTCTCCCCCCGGGCTCGCAGCCGGGAGTGAGTGA
CCCCAAGGAGGACTGGATGGCGGCCCACTCAGTTTTGTAGACGGGAGCAGCAGCCCTCCT
CGAGGTTGCCAGCTAGTGATGCATTGCCAGCGCGTGCTCACCATCCACCGAGTATGGGCG
CCTGGACCGAGGGTCTGAGCTCTGAAGAGTGGTGACCAGCAGAGTTTTAGAGCCGGCAGC
AATGGCAGGAACACCCCAGCCCAAGACAAGGATAAGCTGCAGCAGGGGCAGAATTTGGAA
GTTGCAAGGACCAGTGGCAGCCATCAACTTGGACATGGAAAATACAGGCTTCAATGTTTT
GTTTTGTGCCGAGTATCAAAGAGGACATTCTTAATGTTAAAGAGCCAAGAAACGGATTTG
GCACCTTTTTTCTAGGACAGCGGAGTCATTAAATTCATAGTTTCCTAGTATTGTCCCTTA
AGCAAAAGTAGCTTTTTTGTACTTGTAAGTATTGTATGCATTTGTTATACTGGGAGAGAG
AAAATTCCTGAAATTTGTATCTCCATGCAGTTACCATAGAGGTAATAAAAGGATGCTCTT
TTGTATTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGTTAGGGCCTGTCCGCGGCCGCGAGGGCGCCAGAGCTTGTTAGTTTCTCGACCGAT
GTTCCCGGGAAGCGTAACTGGAGTGCGGCAGGCGGCTGCGGCCAGGCGGGCCTGGGGGCG
GGCGCCTTGGCCCTGTGTTCATATCTAGGGACCGAAATGGAGGAGCGCGTGCATCTTTGT
CTGGCAGGGTTCCGCGGTCTGGGAACCTCTCCCCCCGGGCTCGCAGCCGGGAGTGAGTGA
CCCCAAGGAGGACTGGATGGCGGCCCACTCAGTTTTGTAGACGGGAGCAGCAGCCCTCCT
CGAGGTTGCCAGCTAGTGATGCATTGCCAGCGCGTGCTCACCATCCACCGAGTATGGGCG
CCTGGACCGAGGGTCTGAGCTCTGAAGAGTGGTGACCAGCAGAGTTTTAGAGCCGGCAGC
AATGGCAGGAACACCCCAGCCCAAGACAAGGATAAGCTGCAGCAGGGGCAGAATTTGGAA
GTTGCAAGGACCAGTGGCAGCCATCAACTTGGACATGGAAAATACAGGCTTCAATGTTTT
GTTTTGTGCCGAGTATCAAAGAGGACATTCTTAATGTTAAAGAGCCAAGAAACGGATTTG
GCACCTTTTTTCTAGGACAGCGGAGTCATTAAATTCATAGTTTCCTAGTATTGTCCCTTA
AGCAAAAGTAGCTTTTTTGTACTTGTAAGTATTGTATGCATTTGTTATACTGGGAGAGAG
AAAATTCCTGAAATTTGTATCTCCATGCAGTTACCATAGAGGTAATAAAAGGATGCTCTT
TTGTATTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               558-663, + strand, RNAz p=0.73337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-663, + strand, RNAz p=0.73337

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152350, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152350, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-256, gnl|bosTau2|chr19 (23725880-23725625)
               

               
               1-256, gnl|Hg17|chr17 (16283105-16283453)
               


               
               449-789, gnl|bosTau2|chr19 (23724102-23723762)
               

               
               449-789, gnl|Hg17|chr17 (16285405-16286057)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-256, gnl|bosTau2|chr19 (23725880-23725625)
               

               
               1-256, gnl|Hg17|chr17 (16283105-16283453)
               


               
               449-789, gnl|bosTau2|chr19 (23724102-23723762)
               

               
               449-789, gnl|Hg17|chr17 (16285405-16286057)

	1-256, gnl\|bosTau2\|chr19 (23725880-23725625)
	1-256, gnl\|Hg17\|chr17 (16283105-16283453)

	449-789, gnl\|bosTau2\|chr19 (23724102-23723762)
	449-789, gnl\|Hg17\|chr17 (16285405-16286057)