Non-Coding RNA Search

Ss1.1-Pig3-SRG8003E08.3

Sequence:


               
               CTCATATTCCCTTCTCAGTCCCTGGGCAGAGAGCCCACCACGGGGGATGCCGCTCCTGGG
CTAAGCAGGGGCCCCTGCTGGGGAGGAGGGGGGTGGGCTCTGGGTTTTTCTCCTTTTAAA
GCCCAAATTGCTGAAATTGAGGAAATTCCTGGCCAGGCTGAGCGGAGCTTCAAACAAACT
CTGGATGAACCGGCTGTAAACACTCCCAGCTGCGATGCCCATGGCTGCGAAGCCTGGACT
CACAATCTGACACACACCTCCTTGGAGACACTCTCACATGTTGTCAACATGCAGGGCACA
AAAGCAGGCACGTTACCACTGGGCTCCTATACCCCAAGGGGACCCTGGCACAGAACACCC
AAACGGGCACAGAGGCATACTCGCTCCAGCCACACGGAGGTGGATGCACAAGTCATAAAC
CCGACACACAACACGCAGCACTCCCTTCACAGCTGCAAGTGAGCAGCTCTGCCACCAGAC
AAACACCCACCGCCTGCCAACGCAGCACCAGGACACCAAAGCCGCCAAATACAAACACAC
CCAGTGGCCTTCCCCTCAAAGGACCTTTTTCTTCCCTGGTTGGGACACACAGGTCTAAAC
TACTTTCTAAGTTGTGGAGCAGGCTTGAAGCCCACCCAGACCCTGGAGGCCACAATTGTT
GGTCCAAACTGAAATGCAAAAATATACTGCCATTCAAGTCCCAGGGGCTTCCCCAAGCCG
GCATGAAACAGAGGAGGTCCCCACCTCGGGACCCACAAAAAACCCTTCATGGGAGATTAT
ATCCATCCCAGCACCCCTCCCAACATACCCCAAGTCCCCATCCTATTGGGCCCTGAAAGG
AAGGTGCCCCCCCCACGAGGATTTGGTGCAAGGCAATCGTTCATGTTTCTCGGCCCTTTA
AATGCTACACTGTTCATACTTGCCCCACCCTACCCCACAGTGAGCTCTCCTGTTTGCCAC
CTCCCTCTTCCAGTCTCTCCCAGTTGTTAAATATGAGCAGCTCTGCCCTCCAACCAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATATTCCCTTCTCAGTCCCTGGGCAGAGAGCCCACCACGGGGGATGCCGCTCCTGGG
CTAAGCAGGGGCCCCTGCTGGGGAGGAGGGGGGTGGGCTCTGGGTTTTTCTCCTTTTAAA
GCCCAAATTGCTGAAATTGAGGAAATTCCTGGCCAGGCTGAGCGGAGCTTCAAACAAACT
CTGGATGAACCGGCTGTAAACACTCCCAGCTGCGATGCCCATGGCTGCGAAGCCTGGACT
CACAATCTGACACACACCTCCTTGGAGACACTCTCACATGTTGTCAACATGCAGGGCACA
AAAGCAGGCACGTTACCACTGGGCTCCTATACCCCAAGGGGACCCTGGCACAGAACACCC
AAACGGGCACAGAGGCATACTCGCTCCAGCCACACGGAGGTGGATGCACAAGTCATAAAC
CCGACACACAACACGCAGCACTCCCTTCACAGCTGCAAGTGAGCAGCTCTGCCACCAGAC
AAACACCCACCGCCTGCCAACGCAGCACCAGGACACCAAAGCCGCCAAATACAAACACAC
CCAGTGGCCTTCCCCTCAAAGGACCTTTTTCTTCCCTGGTTGGGACACACAGGTCTAAAC
TACTTTCTAAGTTGTGGAGCAGGCTTGAAGCCCACCCAGACCCTGGAGGCCACAATTGTT
GGTCCAAACTGAAATGCAAAAATATACTGCCATTCAAGTCCCAGGGGCTTCCCCAAGCCG
GCATGAAACAGAGGAGGTCCCCACCTCGGGACCCACAAAAAACCCTTCATGGGAGATTAT
ATCCATCCCAGCACCCCTCCCAACATACCCCAAGTCCCCATCCTATTGGGCCCTGAAAGG
AAGGTGCCCCCCCCACGAGGATTTGGTGCAAGGCAATCGTTCATGTTTCTCGGCCCTTTA
AATGCTACACTGTTCATACTTGCCCCACCCTACCCCACAGTGAGCTCTCCTGTTTGCCAC
CTCCCTCTTCCAGTCTCTCCCAGTTGTTAAATATGAGCAGCTCTGCCCTCCAACCAAAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-159, + strand, RNAz p=0.856639
               

               
               468-586, - strand, RNAz p=0.947162

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.856639
               

               
               468-586, - strand, RNAz p=0.947162

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1020, gnl|bosTau2|chr5 (19199484-19198491)
               

               
               1-1020, gnl|Hg17|chr12 (51897718-51898737)
               

               
               1-1020, gnl|Mm7|chr15 (102229999-102230928)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1020, gnl|bosTau2|chr5 (19199484-19198491)
               

               
               1-1020, gnl|Hg17|chr12 (51897718-51898737)
               

               
               1-1020, gnl|Mm7|chr15 (102229999-102230928)

	1-159, + strand, RNAz p=0.856639
	468-586, - strand, RNAz p=0.947162

	1-1020, gnl\|bosTau2\|chr5 (19199484-19198491)
	1-1020, gnl\|Hg17\|chr12 (51897718-51898737)
	1-1020, gnl\|Mm7\|chr15 (102229999-102230928)