Non-Coding RNA Search

Ss1.1-Pig3-SRG8003E19.3

Sequence:


               
               GCCCGCCACCGCCACCGCACGTGCCCATGGCTTCGGGCATCCGCCGCCCCGGGCCCTGGC
CCGGAAGTGCGGCGCAGTTCCCTTGGCCAGCACGGAGTCCGAGTCCCAGCCGGAGCACGC
CGCGGAGGCTCTGTGCACCGTGTGCGCTTGCGCACTCCAGGATGAAGAGGGTCCCCTGTG
TTGCCCCCACCCTGGCTGCTCCCTCAGGGCGCATGTGATCTGCCTGGCAGAAGAGTTCCT
GCATGAGGAGCCAGGGCAGCTTCTGCCGCTGGAGGGCCAATGCCCTGGGTGAGTCCAGCA
CCCCTCCGCCAGCCTGGTGTAGCTCTGGGAAGACGGTGCCCAGTGGTCCAAGTCCAGGCC
TGGGGCAGCCGAGTCCTCATCTTGGCACCCAGGTCCTGGCCTGGAGGAGGCTTGTGATCC
TGACTGTCTCATACCAACCACACCTCTTGGTAGCTGTAAGAACTCAGTGCTGTGGGGAGA
CCTGGTCTGGCTGAGCCAGATGGGCACCGAGGAGGAAGAGGACTTGGAATTAGAAGAGGA
ACACTGGACTGACATGCTGGAGACCTGATCCTCAGCGTCCCCAACTTCCGCCCACCCTTT
ACCCATTTCCCCCCCCACCGTGGTCTGGGAAGTTTTTACTAGAGTACAATAAAAAGTCTG
AGTTAAGAGTACCTTCTTGTGCTTCCTGGGGGGCAGGTGGGGTAGGAGGCAGAGGCCCTG
TTAGTCACTAGGGCCTGAGGAGAATTGGGGGGGGGGGGTGGGACTGGCCCCAGCATGGAC
TAGCCTCCCAGCTCTCCCCAGCCTGCCTCTGAGGCCACACAGTTCTTTGAGGGCTTGGGA
GACTCACACCCTTGACACAGAACCCACCCTGCCCCAGTGCCCAGCTTGACTCTTGACTTT
AATCCAAATATTGAGACAGTGGAATTCTCAGTGGCT------------------------
------------------------------------------------------------
------------------------------------------------AGTTGAGGGAGC
ACTCTCCTTTCTTAGGGGGGGAGTGTCCCGTGGCTCTCTAAGCCCAGTTCCTTTTCTTTT
TTTTTTTTAGTCTTTTTTAGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCCACCGCCACCGCACGTGCCCATGGCTTCGGGCATCCGCCGCCCCGGGCCCTGGC
CCGGAAGTGCGGCGCAGTTCCCTTGGCCAGCACGGAGTCCGAGTCCCAGCCGGAGCACGC
CGCGGAGGCTCTGTGCACCGTGTGCGCTTGCGCACTCCAGGATGAAGAGGGTCCCCTGTG
TTGCCCCCACCCTGGCTGCTCCCTCAGGGCGCATGTGATCTGCCTGGCAGAAGAGTTCCT
GCATGAGGAGCCAGGGCAGCTTCTGCCGCTGGAGGGCCAATGCCCTGGGTGAGTCCAGCA
CCCCTCCGCCAGCCTGGTGTAGCTCTGGGAAGACGGTGCCCAGTGGTCCAAGTCCAGGCC
TGGGGCAGCCGAGTCCTCATCTTGGCACCCAGGTCCTGGCCTGGAGGAGGCTTGTGATCC
TGACTGTCTCATACCAACCACACCTCTTGGTAGCTGTAAGAACTCAGTGCTGTGGGGAGA
CCTGGTCTGGCTGAGCCAGATGGGCACCGAGGAGGAAGAGGACTTGGAATTAGAAGAGGA
ACACTGGACTGACATGCTGGAGACCTGATCCTCAGCGTCCCCAACTTCCGCCCACCCTTT
ACCCATTTCCCCCCCCACCGTGGTCTGGGAAGTTTTTACTAGAGTACAATAAAAAGTCTG
AGTTAAGAGTACCTTCTTGTGCTTCCTGGGGGGCAGGTGGGGTAGGAGGCAGAGGCCCTG
TTAGTCACTAGGGCCTGAGGAGAATTGGGGGGGGGGGGTGGGACTGGCCCCAGCATGGAC
TAGCCTCCCAGCTCTCCCCAGCCTGCCTCTGAGGCCACACAGTTCTTTGAGGGCTTGGGA
GACTCACACCCTTGACACAGAACCCACCCTGCCCCAGTGCCCAGCTTGACTCTTGACTTT
AATCCAAATATTGAGACAGTGGAATTCTCAGTGGCT------------------------
------------------------------------------------------------
------------------------------------------------AGTTGAGGGAGC
ACTCTCCTTTCTTAGGGGGGGAGTGTCCCGTGGCTCTCTAAGCCCAGTTCCTTTTCTTTT
TTTTTTTTAGTCTTTTTTAGGGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               158-277, - strand, RNAz p=0.88537
               

               
               318-463, + strand, RNAz p=0.979809

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-277, - strand, RNAz p=0.88537
               

               
               318-463, + strand, RNAz p=0.979809

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               197-295, - strand, RNAmicro p=0.921283

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               197-295, - strand, RNAmicro p=0.921283

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               158-539, gnl|bosTau2|chr25 (25077560-25077165)
               

               
               158-539, gnl|Hg17|chr16 (28518444-28518058)
               

               
               158-539, gnl|Mm7|chr7 (122788616-122788296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-539, gnl|bosTau2|chr25 (25077560-25077165)
               

               
               158-539, gnl|Hg17|chr16 (28518444-28518058)
               

               
               158-539, gnl|Mm7|chr7 (122788616-122788296)

	158-277, - strand, RNAz p=0.88537
	318-463, + strand, RNAz p=0.979809

	158-539, gnl\|bosTau2\|chr25 (25077560-25077165)
	158-539, gnl\|Hg17\|chr16 (28518444-28518058)
	158-539, gnl\|Mm7\|chr7 (122788616-122788296)