Non-Coding RNA Search

Ss1.1-Pig3-SRG8003F11.3

Sequence:


               
               CTTTCTCGATCTAGTGGCTTTCTACTACTCTTCCCGTCTGCCCTGTAACTCCTGAGTTTA
CTTATAACAGATAGAAACTGACCAGCTCTTTCTGAATGCCAAGCAAATTCCTGTTTGAAA
GAAATTAGCCTTGATCACCAGCATGGCTTCTGAGAACTTATCTTTGTTGATCAGCATAAG
TGGCAGGTAGGGTCAGTTTCCCAACATAGGGGATAGAATTTGGGGTTAAGGACCTGCAAA
AAGGGGCTGGTAAGTCCCCTTGCTTTGGGTTGGAACCCCAAAGGGCTGCAAACCTATAAG
GAAGGGTGAGGAAGAAGTAGATTGCATGAACTGTAGTTGAGTTAGAATACTCATTAAGTT
GAACTGCAGTAATCTCTGTTTGCCATTGCTTCTAGTTCCTGGGAGAAGCCATCATAAATC
CTCTCTGGAGAAAAACAACATCCTAGGTCTCAATTATTTCTACAAATGAGTTTTCAAATA
TAATGTCTACAGCCAAAAATAACCAGGCACAGGAAGAGACAACATGAGTGAGAATAACAA
CAGCGATAGACAAGAGGATAGACCCTTGAGGACTCCAGATCTTAGAATTATCAGATAAAG
ATTTTAAAAGAATTATGATTACTGGTGTTCATTAAGATTTTAAAAAAACCTTTAATTCTT
TAGAGAACTAGAAACTACCATGTATATGGAGTAGAAACTACACATACAAACACAGATAAT
TTGAAAAGGCAGATAGTTTAGAACAGAAAAATAGAATAACTAAATTAAGTCAAAGGATAG
ATTTACCTGCAGATAGATATAGCTGGAAAAAAACTGACTTAGAAGGTCAGTCAGAAGAAA
TTATTCAGAGTAAAGCATGGAAAGTAAGAGTGCACACTGAGGGGTGTG------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CACTGAGGTACATCATAGTAAAAGTGCTAAAAATCAAGTGTTTAAAGT
AGCCAGAAGTGAAAAAAGACCACATTCAAACAAGCAACAGCCAGACAGCTAACATTTCAA
CAACAACTGAAGAGAATGGGATGGAAATTTCAAAGTGCTGAAAGTTAGAACTCCATATCC
AGCATTAATCTACAAAAAAATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTCGATCTAGTGGCTTTCTACTACTCTTCCCGTCTGCCCTGTAACTCCTGAGTTTA
CTTATAACAGATAGAAACTGACCAGCTCTTTCTGAATGCCAAGCAAATTCCTGTTTGAAA
GAAATTAGCCTTGATCACCAGCATGGCTTCTGAGAACTTATCTTTGTTGATCAGCATAAG
TGGCAGGTAGGGTCAGTTTCCCAACATAGGGGATAGAATTTGGGGTTAAGGACCTGCAAA
AAGGGGCTGGTAAGTCCCCTTGCTTTGGGTTGGAACCCCAAAGGGCTGCAAACCTATAAG
GAAGGGTGAGGAAGAAGTAGATTGCATGAACTGTAGTTGAGTTAGAATACTCATTAAGTT
GAACTGCAGTAATCTCTGTTTGCCATTGCTTCTAGTTCCTGGGAGAAGCCATCATAAATC
CTCTCTGGAGAAAAACAACATCCTAGGTCTCAATTATTTCTACAAATGAGTTTTCAAATA
TAATGTCTACAGCCAAAAATAACCAGGCACAGGAAGAGACAACATGAGTGAGAATAACAA
CAGCGATAGACAAGAGGATAGACCCTTGAGGACTCCAGATCTTAGAATTATCAGATAAAG
ATTTTAAAAGAATTATGATTACTGGTGTTCATTAAGATTTTAAAAAAACCTTTAATTCTT
TAGAGAACTAGAAACTACCATGTATATGGAGTAGAAACTACACATACAAACACAGATAAT
TTGAAAAGGCAGATAGTTTAGAACAGAAAAATAGAATAACTAAATTAAGTCAAAGGATAG
ATTTACCTGCAGATAGATATAGCTGGAAAAAAACTGACTTAGAAGGTCAGTCAGAAGAAA
TTATTCAGAGTAAAGCATGGAAAGTAAGAGTGCACACTGAGGGGTGTG------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------CACTGAGGTACATCATAGTAAAAGTGCTAAAAATCAAGTGTTTAAAGT
AGCCAGAAGTGAAAAAAGACCACATTCAAACAAGCAACAGCCAGACAGCTAACATTTCAA
CAACAACTGAAGAGAATGGGATGGAAATTTCAAAGTGCTGAAAGTTAGAACTCCATATCC
AGCATTAATCTACAAAAAAATGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               171-360, + strand, RNAz p=0.942293

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-360, + strand, RNAz p=0.942293

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               248-328, + strand, RNAmicro p=0.993272
               

               
               228-311, - strand, RNAmicro p=0.99257

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               248-328, + strand, RNAmicro p=0.993272
               

               
               228-311, - strand, RNAmicro p=0.99257

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-888, gnl|bosTau2|chr3 (61897177-61898062)
               

               
               1-888, gnl|Hg17|chr1 (53940890-53939973)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr3 (61897177-61898062)
               

               
               1-888, gnl|Hg17|chr1 (53940890-53939973)

	248-328, + strand, RNAmicro p=0.993272
	228-311, - strand, RNAmicro p=0.99257

	1-888, gnl\|bosTau2\|chr3 (61897177-61898062)
	1-888, gnl\|Hg17\|chr1 (53940890-53939973)