Non-Coding RNA Search

Ss1.1-Pig3-SRG8003G17.3

Sequence:


               
               GACATTATGTGTTTATTGTGGCCCGACCCCTTGTCCCCACTGCCTCTTGACTGTAATAAC
ATTTTGTTTTTGGTCAAGGCTGTACTCCCAGGGTCTAAGACAGTGTAAGGATCCTGGAAG
GTACTCAGTAAATATTTGTTGAATGAATGAATGTATGCATAGGTTTGTTACAATGCTAAC
TGCTGAATAATTCAAATAATAGTATCAGTAATAGTAATTTACATTTCTTTAAGGCTTTCG
TGTTTACAGAGTATTTCCTGTTCTTCATCTCATTTGAGCTGTGTAATTGTACTTTGGTAT
TGTCACATAGTATTTATCATTTTTGGCAATGAAGTTTAAGAAACTGAAGTTTAAAGAAAT
TAGTTGACTTGCCTGAACTCACACAGGCATTAAATAAATGACTAAGTCAGGACTCAGATT
CAGTGTTTGTTGTACTGCACCACGCTGTTGCAGAGAAAGGGCAAGATAAACAGACTACTT
CCTCTGCTTTCCCAATGTCCACAGTATTTCCTGTGAGCAACTTGGATCCCTTTCCCACCC
CCACGTCATATGGCAGAAGATTTTGACTCATCTTAGCAGAGCTGACTTCAGATAGTAGAT
GCTGGTAAAGTAGCTAACCGTGCTCTGACAGCCACCTCTGGTAGTACTTAGGAATAAACT
ATGTAACACCTACAGAGTGATACAAGTTAACACGAAAGCTTAAAGACTCAGAGAATGCCA
ACATAATTATCCTAAATGTGGTCGCTTTTTAATCCCAAACAAGTAACTCCCTAAGTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATTATGTGTTTATTGTGGCCCGACCCCTTGTCCCCACTGCCTCTTGACTGTAATAAC
ATTTTGTTTTTGGTCAAGGCTGTACTCCCAGGGTCTAAGACAGTGTAAGGATCCTGGAAG
GTACTCAGTAAATATTTGTTGAATGAATGAATGTATGCATAGGTTTGTTACAATGCTAAC
TGCTGAATAATTCAAATAATAGTATCAGTAATAGTAATTTACATTTCTTTAAGGCTTTCG
TGTTTACAGAGTATTTCCTGTTCTTCATCTCATTTGAGCTGTGTAATTGTACTTTGGTAT
TGTCACATAGTATTTATCATTTTTGGCAATGAAGTTTAAGAAACTGAAGTTTAAAGAAAT
TAGTTGACTTGCCTGAACTCACACAGGCATTAAATAAATGACTAAGTCAGGACTCAGATT
CAGTGTTTGTTGTACTGCACCACGCTGTTGCAGAGAAAGGGCAAGATAAACAGACTACTT
CCTCTGCTTTCCCAATGTCCACAGTATTTCCTGTGAGCAACTTGGATCCCTTTCCCACCC
CCACGTCATATGGCAGAAGATTTTGACTCATCTTAGCAGAGCTGACTTCAGATAGTAGAT
GCTGGTAAAGTAGCTAACCGTGCTCTGACAGCCACCTCTGGTAGTACTTAGGAATAAACT
ATGTAACACCTACAGAGTGATACAAGTTAACACGAAAGCTTAAAGACTCAGAGAATGCCA
ACATAATTATCCTAAATGTGGTCGCTTTTTAATCCCAAACAAGTAACTCCCTAAGTAGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               422-570, - strand, RNAz p=0.963664

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-570, - strand, RNAz p=0.963664

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-674, gnl|bosTau2|chr15 (13137217-13137883)
               

               
               10-674, gnl|Hg17|chr11 (116266103-116264778)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-674, gnl|bosTau2|chr15 (13137217-13137883)
               

               
               10-674, gnl|Hg17|chr11 (116266103-116264778)

	10-674, gnl\|bosTau2\|chr15 (13137217-13137883)
	10-674, gnl\|Hg17\|chr11 (116266103-116264778)