Non-Coding RNA Search

Ss1.1-Pig3-SRG8003G23.5

Sequence:


               
               GAAAATTCACACTGGATTGAAGCCTTATAAATGCAATTTATGTGACAAAGCTTTCCGACG
CATGTCTGCCTACCGTCTGCATCAGGAAACTCATGCTAAGCAGAAATGTCTTGAATCTAA
TCAGTATGAAGAAGCTCTCTCCTGTGGCTCATAGTTTGAGCGTCATTTGGGAGACCAAAC
TGGGGAGAAACTCTTTGACTGCAGCCAGTGCAGAAAATCCTTCCACTGTAAATCATATAT
TCTTGAACATCAAAGGATTCACACCCAGGAGAAGCCCTATAAGTGCACCAAATGTAGGAA
AACATTTAGGTGGCGGTCCAACTTCACTCGTCACATGAGACTGCACCAGGAAGAGACGTT
CTATGATCAAGACGAGTGTAGAGAAGACTTCAGGCAGACCCCCAACGACAGTCAGCCTCA
GAGGGCCCCCACTGTGGAGAACTCTTTTTCGTGTCAGCAGTGTGGGAAAACTTTTACTCA
AAAGAAATCTCTCATTGATCATCAGAGAAGTCACTCAGGTGAAAAATCATACTGGTGCAG
TGAATGTGCAAAAGAGTTTACTCACAGGTCCACCTTTGTTGTTCATAAGAAGCAGCACAC
CTTTAAAAGAGAACCTGAGGATGCGCCACCGTTGAGTCAGGACAGAGCATTCCAAGTCCC
CCAGAGCAGTCACACTACAGAGGAACCCTGCACATGCAGCCAGTGTGGAAGAGCCTTCCG
GAACCACTCAATTCTCCTCATCCATCAGAGAGTTCACACCAGAGAGAAGCCGTATAAGTG
CATGGAGTGTGGGAAGTCTTTCCGTTGGAGTTCGAACCTCTCCCAACACCAGAGGGTTCA
CTCTTTGGAAAAACCATATATGTACCGTGAAAGGGAAGACCCTCCAAATCTGCAGTCACA
GATCCTCACTGGTGAGAAACCTTTCTGGTGCCAAGAATGTGGGAAAACCTTTACACGTAA
AAGAAGCCTTATAGATCACAAGGGGATACACAGTGGAGAGAAGCGCTATAAATGTAACCT
GTGTGGGAAATCTTATGACAGAAATCACCGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATTCACACTGGATTGAAGCCTTATAAATGCAATTTATGTGACAAAGCTTTCCGACG
CATGTCTGCCTACCGTCTGCATCAGGAAACTCATGCTAAGCAGAAATGTCTTGAATCTAA
TCAGTATGAAGAAGCTCTCTCCTGTGGCTCATAGTTTGAGCGTCATTTGGGAGACCAAAC
TGGGGAGAAACTCTTTGACTGCAGCCAGTGCAGAAAATCCTTCCACTGTAAATCATATAT
TCTTGAACATCAAAGGATTCACACCCAGGAGAAGCCCTATAAGTGCACCAAATGTAGGAA
AACATTTAGGTGGCGGTCCAACTTCACTCGTCACATGAGACTGCACCAGGAAGAGACGTT
CTATGATCAAGACGAGTGTAGAGAAGACTTCAGGCAGACCCCCAACGACAGTCAGCCTCA
GAGGGCCCCCACTGTGGAGAACTCTTTTTCGTGTCAGCAGTGTGGGAAAACTTTTACTCA
AAAGAAATCTCTCATTGATCATCAGAGAAGTCACTCAGGTGAAAAATCATACTGGTGCAG
TGAATGTGCAAAAGAGTTTACTCACAGGTCCACCTTTGTTGTTCATAAGAAGCAGCACAC
CTTTAAAAGAGAACCTGAGGATGCGCCACCGTTGAGTCAGGACAGAGCATTCCAAGTCCC
CCAGAGCAGTCACACTACAGAGGAACCCTGCACATGCAGCCAGTGTGGAAGAGCCTTCCG
GAACCACTCAATTCTCCTCATCCATCAGAGAGTTCACACCAGAGAGAAGCCGTATAAGTG
CATGGAGTGTGGGAAGTCTTTCCGTTGGAGTTCGAACCTCTCCCAACACCAGAGGGTTCA
CTCTTTGGAAAAACCATATATGTACCGTGAAAGGGAAGACCCTCCAAATCTGCAGTCACA
GATCCTCACTGGTGAGAAACCTTTCTGGTGCCAAGAATGTGGGAAAACCTTTACACGTAA
AAGAAGCCTTATAGATCACAAGGGGATACACAGTGGAGAGAAGCGCTATAAATGTAACCT
GTGTGGGAAATCTTATGACAGAAATCACCGCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21961273|gb|AAH34572.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21961273|gb|AAH34572.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               831-950, - strand, RNAz p=0.549715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               831-950, - strand, RNAz p=0.549715

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-1052, gnl|bosTau2|chr22 (12544734-12545785)
               

               
               1-1052, gnl|Hg17|chr19 (42310459-42311369)
               


               
               8-1048, gnl|bosTau2|chr17 (22552775-22551707)
               

               
               8-1048, gnl|Mm7|chr5 (109294603-109295640)
               


               
               270-1034, gnl|bosTau2|chr10 (8996845-8996054)
               

               
               270-1034, gnl|Hg17|chr19 (42818650-42817775)
               

               
               270-1034, gnl|Mm7|chr2 (127310276-127309569)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1052, gnl|bosTau2|chr22 (12544734-12545785)
               

               
               1-1052, gnl|Hg17|chr19 (42310459-42311369)
               


               
               8-1048, gnl|bosTau2|chr17 (22552775-22551707)
               

               
               8-1048, gnl|Mm7|chr5 (109294603-109295640)
               


               
               270-1034, gnl|bosTau2|chr10 (8996845-8996054)
               

               
               270-1034, gnl|Hg17|chr19 (42818650-42817775)
               

               
               270-1034, gnl|Mm7|chr2 (127310276-127309569)

	1-1052, gnl\|bosTau2\|chr22 (12544734-12545785)
	1-1052, gnl\|Hg17\|chr19 (42310459-42311369)

	8-1048, gnl\|bosTau2\|chr17 (22552775-22551707)
	8-1048, gnl\|Mm7\|chr5 (109294603-109295640)

	270-1034, gnl\|bosTau2\|chr10 (8996845-8996054)
	270-1034, gnl\|Hg17\|chr19 (42818650-42817775)
	270-1034, gnl\|Mm7\|chr2 (127310276-127309569)