Non-Coding RNA Search

Ss1.1-Pig3-SRG8003H05.3

Sequence:


               
               GCCTCGGAGACTGCGGCCGGCACCGAGTCGCCCCACTCGAGCGCTTCCCCGTGCCAGGAG
CACAAGCGAGGGGGGCTCGGGGAGCTGAAGGGGACGCCAGCCACAGCGCTGAGCCCCCCG
GAGCCGGCGCCGTCGCCTGGGCAGCAGCAGCAGGCCGCGGCCCACCTGCTGGGCCCTCCG
GGTGGCCCGGGCCTGCCCCCCGAGGCCCACCTGAAGCCCGAGCACCACTACGCCTTCAAC
CACCCCTTCTCCATCAACAACCTCATGTCTTCCGAGCAGCAGCACCACCACGGCCACCAC
CACCACCAGCCCCACAAAATGGACCTCAAGGCCTACGATCAGGTGATGCACTACCCGGGC
TACGGCTCCCCCATGCCAGGAAGCCTGGCCATGGGCCCGGTCACGAACAAAGCGGGCCTG
GACGCCTCGCCCCTGGCTGCAGACACCTCCTACTACCATGGGGTGTACTCCCGGCCCATT
ATGAACTCCTCTTAAGAAGACGGATGCTTCCCGCCTATCTCGGACCCGACGAGAGAGGAA
GCGGGGATGGAGACTTTGAGAAAGGGGTGCTGGAAAGATGCAGGGGAGCAGGACCCATCA
CACCCATGCCCCGACAGCAGTATCCCTCATCATCCTATGCAGCCCTTCCTCCCCCAATAT
GGGCCACACTGACGTCTATCATCTTGTATAAGGAGGGCAAGGGAAAAAAGATAAACAGTC
AAAAAGGAAGAAAGAAAAGCCTCAGTTTCCACTACTGTGTAGACACCTGCTTCTTTAAGC
ACCTGCGAATTTTGACTTTTTGTTGTCGTGGTTCCTTTCCATTGCTGTTGTTGCAGGGAA
GTCTTACTTTATTAAAAACAGAAACAAACAAACAAAAAAACAAAAAACAAAAAAGAAAAA
AACCCAAATTTTTGTGACTCAGTGTAAAACCACGTAGTTTTAACAGAGGACAGAGTTGTA
CTACTGTTTAAGAAAGAGAAAAAAAAAAAAAACGATGTAAGGGTCTGTTGTAAATGACCA
AGAAAAAGAAAAAAAAAAAGCATTCTCATTCTCGACACGGTGAAATCCAGGTCTCAAGTC
TGATTAATTTATGGTTTCCGCGTGCTTTATTTATGGCTTATAAATGTGTGTTCCTACTGC
AAGGACCAGAGTTCCACAAATCTATATTAAAGTGTTATTGCCCGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCGGAGACTGCGGCCGGCACCGAGTCGCCCCACTCGAGCGCTTCCCCGTGCCAGGAG
CACAAGCGAGGGGGGCTCGGGGAGCTGAAGGGGACGCCAGCCACAGCGCTGAGCCCCCCG
GAGCCGGCGCCGTCGCCTGGGCAGCAGCAGCAGGCCGCGGCCCACCTGCTGGGCCCTCCG
GGTGGCCCGGGCCTGCCCCCCGAGGCCCACCTGAAGCCCGAGCACCACTACGCCTTCAAC
CACCCCTTCTCCATCAACAACCTCATGTCTTCCGAGCAGCAGCACCACCACGGCCACCAC
CACCACCAGCCCCACAAAATGGACCTCAAGGCCTACGATCAGGTGATGCACTACCCGGGC
TACGGCTCCCCCATGCCAGGAAGCCTGGCCATGGGCCCGGTCACGAACAAAGCGGGCCTG
GACGCCTCGCCCCTGGCTGCAGACACCTCCTACTACCATGGGGTGTACTCCCGGCCCATT
ATGAACTCCTCTTAAGAAGACGGATGCTTCCCGCCTATCTCGGACCCGACGAGAGAGGAA
GCGGGGATGGAGACTTTGAGAAAGGGGTGCTGGAAAGATGCAGGGGAGCAGGACCCATCA
CACCCATGCCCCGACAGCAGTATCCCTCATCATCCTATGCAGCCCTTCCTCCCCCAATAT
GGGCCACACTGACGTCTATCATCTTGTATAAGGAGGGCAAGGGAAAAAAGATAAACAGTC
AAAAAGGAAGAAAGAAAAGCCTCAGTTTCCACTACTGTGTAGACACCTGCTTCTTTAAGC
ACCTGCGAATTTTGACTTTTTGTTGTCGTGGTTCCTTTCCATTGCTGTTGTTGCAGGGAA
GTCTTACTTTATTAAAAACAGAAACAAACAAACAAAAAAACAAAAAACAAAAAAGAAAAA
AACCCAAATTTTTGTGACTCAGTGTAAAACCACGTAGTTTTAACAGAGGACAGAGTTGTA
CTACTGTTTAAGAAAGAGAAAAAAAAAAAAAACGATGTAAGGGTCTGTTGTAAATGACCA
AGAAAAAGAAAAAAAAAAAGCATTCTCATTCTCGACACGGTGAAATCCAGGTCTCAAGTC
TGATTAATTTATGGTTTCCGCGTGCTTTATTTATGGCTTATAAATGTGTGTTCCTACTGC
AAGGACCAGAGTTCCACAAATCTATATTAAAGTGTTATTGCCCGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|433395|gb|AAA03606.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|433395|gb|AAA03606.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               164-516, - strand, RNAz p=0.98954

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-516, - strand, RNAz p=0.98954

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-881, gnl|bosTau2|chr13 (26670592-26669706)
               

               
               7-881, gnl|Hg17|chr20 (22510976-22510099)
               

               
               7-881, gnl|Mm7|chr2 (147784862-147784013)
               


               
               882-1185, gnl|bosTau2|chr13 (26669733-26669427)
               

               
               882-1185, gnl|Hg17|chr20 (22510112-22509826)
               

               
               882-1185, gnl|Mm7|chr2 (147784035-147783738)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-881, gnl|bosTau2|chr13 (26670592-26669706)
               

               
               7-881, gnl|Hg17|chr20 (22510976-22510099)
               

               
               7-881, gnl|Mm7|chr2 (147784862-147784013)
               


               
               882-1185, gnl|bosTau2|chr13 (26669733-26669427)
               

               
               882-1185, gnl|Hg17|chr20 (22510112-22509826)
               

               
               882-1185, gnl|Mm7|chr2 (147784035-147783738)

	7-881, gnl\|bosTau2\|chr13 (26670592-26669706)
	7-881, gnl\|Hg17\|chr20 (22510976-22510099)
	7-881, gnl\|Mm7\|chr2 (147784862-147784013)

	882-1185, gnl\|bosTau2\|chr13 (26669733-26669427)
	882-1185, gnl\|Hg17\|chr20 (22510112-22509826)
	882-1185, gnl\|Mm7\|chr2 (147784035-147783738)