Non-Coding RNA Search

Ss1.1-Pig3-SRG8003H16.5

Sequence:


               
               TTTGTGCATGAAATGAGACTTCCTTTCAGTGTATGAGCTTAAAGCAAGCTCAAATCATAC
ATGACAAAGTGTAATTAACACTGATATTTGTGTTAAATTTCCAGTAGAGCTTGAAAAAGT
ACATTGTGATGGAATTTCATCTTTAACATTTTATAACCTTACACTTGCTTCTTGTCTTTT
TGTGGGTTCAAGAGCCCGTTGATTTGTGAAGAATTTGCTGCCTTCTTATGAACTTGCTGA
CTTGTTCTCTTGTGAAATTTCTTGCACATCTGAATACTGTGGAAGAAACAATAAAACTAC
ACCATGAGGAAAACTAAAGGTCTTTATTTAAAATCTGGCATTGCATTAATATATGATTTT
ATATTGTGATTTTTTTCCCATACATTTCCTCAGTAGTGCTGTTCGGTAAAGCAGTTCATA
GTGGTTTTGGCTAGTTCCATGAGTTTTACCCAGTATTTAGTAGCATCTCTCAGCAACATC
TGAATATTTCTGCTCAGCAATCTCTATTTCTCTAAGATCTAAACATAGTTCAGAATTTCA
TCTTTGGTTGAGTTTCCCTTTTAACTTCCGTTCATAGACATATATGTGACTTCCAGTTCG
ACTCTCCGGAAAGTGAGTGTGGAAGAAAACGGCAGTTCTCTCATAGTTGTTTGAAATTAG
GAAAGGACTTATTTCCTAGAAGGAAATAAATGTTTTTAAGCAAATAAAAGCCACTTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTGCATGAAATGAGACTTCCTTTCAGTGTATGAGCTTAAAGCAAGCTCAAATCATAC
ATGACAAAGTGTAATTAACACTGATATTTGTGTTAAATTTCCAGTAGAGCTTGAAAAAGT
ACATTGTGATGGAATTTCATCTTTAACATTTTATAACCTTACACTTGCTTCTTGTCTTTT
TGTGGGTTCAAGAGCCCGTTGATTTGTGAAGAATTTGCTGCCTTCTTATGAACTTGCTGA
CTTGTTCTCTTGTGAAATTTCTTGCACATCTGAATACTGTGGAAGAAACAATAAAACTAC
ACCATGAGGAAAACTAAAGGTCTTTATTTAAAATCTGGCATTGCATTAATATATGATTTT
ATATTGTGATTTTTTTCCCATACATTTCCTCAGTAGTGCTGTTCGGTAAAGCAGTTCATA
GTGGTTTTGGCTAGTTCCATGAGTTTTACCCAGTATTTAGTAGCATCTCTCAGCAACATC
TGAATATTTCTGCTCAGCAATCTCTATTTCTCTAAGATCTAAACATAGTTCAGAATTTCA
TCTTTGGTTGAGTTTCCCTTTTAACTTCCGTTCATAGACATATATGTGACTTCCAGTTCG
ACTCTCCGGAAAGTGAGTGTGGAAGAAAACGGCAGTTCTCTCATAGTTGTTTGAAATTAG
GAAAGGACTTATTTCCTAGAAGGAAATAAATGTTTTTAAGCAAATAAAAGCCACTTTTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-158, + strand, RNAz p=0.99955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, + strand, RNAz p=0.99955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr10 (38733559-38732839)
               

               
               1-720, gnl|Hg17|chr15 (53435442-53434732)
               

               
               1-720, gnl|Mm7|chr9 (73048238-73048820)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr10 (38733559-38732839)
               

               
               1-720, gnl|Hg17|chr15 (53435442-53434732)
               

               
               1-720, gnl|Mm7|chr9 (73048238-73048820)

	1-720, gnl\|bosTau2\|chr10 (38733559-38732839)
	1-720, gnl\|Hg17\|chr15 (53435442-53434732)
	1-720, gnl\|Mm7\|chr9 (73048238-73048820)