Non-Coding RNA Search

Ss1.1-Pig3-SRG8003J22.3

Sequence:


               
               GTTCTTAGGTTTTGGCTCATATGAAGAAGTCAGAGTACGAAGTCCCACAGTACTTTTCCT
CAGCAAAGTATGCCAAAGAAGGTCTTATTCGCAAACCAATATTTGATAATTTCCGCCCCC
CTCCACTAACTCCTGAGGATGTCGGCTTCGCATCCGGGTTTTCTACATCTGGTACTGCTG
CTTCAGCCCGATTGTTTTCGCCACTCCATTCTGGAACAAGGTTTGATATGCACAAACGGA
GCCCTCTTCTGAGAGCTCCAAGATTTACTCCAAGCGAGGCTCACTCTAGAATATTTGAGT
CTGTAACCTTGCCTAGTAATCGAACTTCTGCTGGAACATCTTCTTCAGGATTATCGAACA
GGAAAAGGAAAAGAAAAGTGTTTAGCCCTATTCGATCTGAACCAAGATCTCCTTCTCACT
CCATGAGGACAAGAAGCGGAAGGCTTATCACTTCGGAGCTGTCACCTCTCACCCCACCGT
CTTCTGTCTCTTCCTCGTTAAGCATTTCTGTTAGTCCTCTTGCCACTAGTGCCTTAAACC
CAACTGTTACTTTTCCTTCTCATTCCCTGACTCAGTCTGGGGAATCTGCAGAGAAAAACC
AGAGACCAAGGAAGCAGACTAGTGCTCCGGCAGAGCCATTTTCATCCAGTAGTCCCACTC
CTCTCTTCCCTTGGTTTACCCCAGGCTCTCAGACTGAAAGAGGGAGGAATAAAGACAAGG
CCCCTGAGGAGCTGTCCAAAGAGCGAGATGCTGACAAGAGCGTGGAGAAGGACAAGAGTA
GAGAGAGAGACCGGGAGAGAGAAAAAGAGAATAAGCGGGAGTCCAGGAAAGAGAAAAGGA
AAAAGGGATCAGAAATTCAGAGTAGCTCTGCTTTGTATCCTGTGGGTAGGGTTTCCAAAG
AGAAGGTCGTTGATGAAGATGTGGCCACTTCATCTTCTGCCAAAAAAGCAACAGGGCGGA
AGAAGTCTTCATCACTTGATTCTGGGACTGATATTGCTTCTGTGACTATTGGGGATACAA
CAGCTGTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTTAGGTTTTGGCTCATATGAAGAAGTCAGAGTACGAAGTCCCACAGTACTTTTCCT
CAGCAAAGTATGCCAAAGAAGGTCTTATTCGCAAACCAATATTTGATAATTTCCGCCCCC
CTCCACTAACTCCTGAGGATGTCGGCTTCGCATCCGGGTTTTCTACATCTGGTACTGCTG
CTTCAGCCCGATTGTTTTCGCCACTCCATTCTGGAACAAGGTTTGATATGCACAAACGGA
GCCCTCTTCTGAGAGCTCCAAGATTTACTCCAAGCGAGGCTCACTCTAGAATATTTGAGT
CTGTAACCTTGCCTAGTAATCGAACTTCTGCTGGAACATCTTCTTCAGGATTATCGAACA
GGAAAAGGAAAAGAAAAGTGTTTAGCCCTATTCGATCTGAACCAAGATCTCCTTCTCACT
CCATGAGGACAAGAAGCGGAAGGCTTATCACTTCGGAGCTGTCACCTCTCACCCCACCGT
CTTCTGTCTCTTCCTCGTTAAGCATTTCTGTTAGTCCTCTTGCCACTAGTGCCTTAAACC
CAACTGTTACTTTTCCTTCTCATTCCCTGACTCAGTCTGGGGAATCTGCAGAGAAAAACC
AGAGACCAAGGAAGCAGACTAGTGCTCCGGCAGAGCCATTTTCATCCAGTAGTCCCACTC
CTCTCTTCCCTTGGTTTACCCCAGGCTCTCAGACTGAAAGAGGGAGGAATAAAGACAAGG
CCCCTGAGGAGCTGTCCAAAGAGCGAGATGCTGACAAGAGCGTGGAGAAGGACAAGAGTA
GAGAGAGAGACCGGGAGAGAGAAAAAGAGAATAAGCGGGAGTCCAGGAAAGAGAAAAGGA
AAAAGGGATCAGAAATTCAGAGTAGCTCTGCTTTGTATCCTGTGGGTAGGGTTTCCAAAG
AGAAGGTCGTTGATGAAGATGTGGCCACTTCATCTTCTGCCAAAAAAGCAACAGGGCGGA
AGAAGTCTTCATCACTTGATTCTGGGACTGATATTGCTTCTGTGACTATTGGGGATACAA
CAGCTGTCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               204-523, - strand, RNAz p=0.9688

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-523, - strand, RNAz p=0.9688

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               45-1032, gnl|bosTau2|chr15 (15066388-15065401)
               

               
               45-1032, gnl|Hg17|chr11 (117848969-117849956)
               

               
               45-1032, gnl|Mm7|chr9 (44783017-44782033)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-1032, gnl|bosTau2|chr15 (15066388-15065401)
               

               
               45-1032, gnl|Hg17|chr11 (117848969-117849956)
               

               
               45-1032, gnl|Mm7|chr9 (44783017-44782033)

	45-1032, gnl\|bosTau2\|chr15 (15066388-15065401)
	45-1032, gnl\|Hg17\|chr11 (117848969-117849956)
	45-1032, gnl\|Mm7\|chr9 (44783017-44782033)