Non-Coding RNA Search

Ss1.1-Pig3-SRG8003L06.5

Sequence:


               
               GTGAAATTCTCTGTCCCAGGAGCTCTGGTCTTTCTGGTTGGCCTTCATATATTTACATGT
ATGAATACCTGTGTATATCAGGCCAAGTCTTCAATCTAGGAATCTTGCTTTCCATTCCCT
TCCAAAGTAAAATGATCTCTGATCATGTTAGCTACTTGTAATGTGCATCTGGCTAGCCAT
AATATTAAGTCACTTAGAGGGGAAATCATGCAGAAGAAAAAGAAAGCTTTAGAAGGTCTT
CGTAAATGGTAGCTATCTTGTCGTTAACCCTACCCAACCTAAGCATGGAGCACGTCCTTT
GATATAACCCTCTACCTTGGTACCAAGTTCCCCTCTCCTGCATTCCCCTCCCAAGTGCAC
AGTGCCTCATGACCTTGACTAACCTAAGTTCAGCTCGCCCAGAGTAACTTCTGAAACTCT
TTTTTAAATCTCAAGGCTTCACTTCTGGATTGCTTGTCCTCAGTGGGAATGCTGTCTGGC
CATAGCTTTAGTGCCACTGGCTTGAGGATGCCACTTGTATCTTTTACTAAGGTGTGAAAT
ATAAACACATTCTTTCCCTAGCTTGAACTCTCACATTTTTATTTTTGCCAAAAAAAAAAA
GGTGAGTTAATAATTAGGGGCATTCTTTTCAAACTACCCAATGAAGATTCTTTTGGGTGT
CAGGCGTCTCTTTAACCGAATAGCCACCAGGAAGGTGACTGTGAGAAGCTGGTTACAGTG
TTGAAGGGATTTAAAGGGCACATAAGGCTTCAGGCAAATATGGCCAAGGTGAAGTTTGTA
AAAACATTCTTCAAGAGAGTGGATGGCACAGATTACTTACTGTGTCACCTATTTTAGGGG
TTGTTATGCCTTTAGTGAAACACATAAATGAAAAGCATAGGAAAAATATCCAATAAGGAG
TCCAGTCTCCTAATGACAAAAACTAAGCAGTATTCCACCCAAAATATGAAACGGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAATTCTCTGTCCCAGGAGCTCTGGTCTTTCTGGTTGGCCTTCATATATTTACATGT
ATGAATACCTGTGTATATCAGGCCAAGTCTTCAATCTAGGAATCTTGCTTTCCATTCCCT
TCCAAAGTAAAATGATCTCTGATCATGTTAGCTACTTGTAATGTGCATCTGGCTAGCCAT
AATATTAAGTCACTTAGAGGGGAAATCATGCAGAAGAAAAAGAAAGCTTTAGAAGGTCTT
CGTAAATGGTAGCTATCTTGTCGTTAACCCTACCCAACCTAAGCATGGAGCACGTCCTTT
GATATAACCCTCTACCTTGGTACCAAGTTCCCCTCTCCTGCATTCCCCTCCCAAGTGCAC
AGTGCCTCATGACCTTGACTAACCTAAGTTCAGCTCGCCCAGAGTAACTTCTGAAACTCT
TTTTTAAATCTCAAGGCTTCACTTCTGGATTGCTTGTCCTCAGTGGGAATGCTGTCTGGC
CATAGCTTTAGTGCCACTGGCTTGAGGATGCCACTTGTATCTTTTACTAAGGTGTGAAAT
ATAAACACATTCTTTCCCTAGCTTGAACTCTCACATTTTTATTTTTGCCAAAAAAAAAAA
GGTGAGTTAATAATTAGGGGCATTCTTTTCAAACTACCCAATGAAGATTCTTTTGGGTGT
CAGGCGTCTCTTTAACCGAATAGCCACCAGGAAGGTGACTGTGAGAAGCTGGTTACAGTG
TTGAAGGGATTTAAAGGGCACATAAGGCTTCAGGCAAATATGGCCAAGGTGAAGTTTGTA
AAAACATTCTTCAAGAGAGTGGATGGCACAGATTACTTACTGTGTCACCTATTTTAGGGG
TTGTTATGCCTTTAGTGAAACACATAAATGAAAAGCATAGGAAAAATATCCAATAAGGAG
TCCAGTCTCCTAATGACAAAAACTAAGCAGTATTCCACCCAAAATATGAAACGGCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               800-889, - strand, RNAz p=0.923104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               800-889, - strand, RNAz p=0.923104

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-960, gnl|bosTau2|chrX (31533733-31532782)
               

               
               2-960, gnl|Hg17|chrX (37894218-37892948)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-960, gnl|bosTau2|chrX (31533733-31532782)
               

               
               2-960, gnl|Hg17|chrX (37894218-37892948)

	2-960, gnl\|bosTau2\|chrX (31533733-31532782)
	2-960, gnl\|Hg17\|chrX (37894218-37892948)