Non-Coding RNA Search

Ss1.1-Pig3-SRG8003L07.5

Sequence:


               
               GACAGCTTACCTTCTCATACTCTTGGTGTCATCTGGACTGGTCTTGCCTTCCACCTGGGA
TGGTCTTCATGAGGGTGGACGTGGCAGTTATAAGGTGTCAGTAAAGTTTATGACTGTCTC
CAAATCAAGAAGTAACTGGATAATGACAAAAGTAATGCTATATGGCTTCCAAGGCTAGGT
TGTAAAAGGCAATGCAGCTTACTGCTGGTGTGTTGGAACACACAAGCTGGCAGTCCTCGA
GCCACCATGTAGAAAAGCTCTACCATCCTGAAGCATCCATGCTATGAGGAAGCCCAATCA
GCCCATGTGGAGAGACCAGATTGAAAGGCCCTGAAACTACAAGCAAAGGAGATGCACAGC
CAGTCCCTAATTTTCCAGCCACCTCCAGCCACTGTCTAAGGGTAAGTGCATCAGATGCTG
AGTCAGAACTGCCAGGTAGAGCCTTTCTTAAATTCTTAACCCATGGAAACCCTGAGAGAA
GGTGACTACTGTTTAATAAGCCTTTTAAGTTCTAAGGTGGTTTGTAACACAGCAGTAGTA
ACTTCGGATCATTTCTGCTGCCTGTGTTACCCACATGGGGCTTCATAAAAAGGAGTTGAT
CCATGAGTGCTCAACACTTAGTTTCAAACTACTTTCTTGGGGCCACTTTGCCTTTTGTCA
AATTTTAGAGATTATTCAACATAGTATTGGAAGACCTAGCCGGAGCACTTAGGCAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCTTACCTTCTCATACTCTTGGTGTCATCTGGACTGGTCTTGCCTTCCACCTGGGA
TGGTCTTCATGAGGGTGGACGTGGCAGTTATAAGGTGTCAGTAAAGTTTATGACTGTCTC
CAAATCAAGAAGTAACTGGATAATGACAAAAGTAATGCTATATGGCTTCCAAGGCTAGGT
TGTAAAAGGCAATGCAGCTTACTGCTGGTGTGTTGGAACACACAAGCTGGCAGTCCTCGA
GCCACCATGTAGAAAAGCTCTACCATCCTGAAGCATCCATGCTATGAGGAAGCCCAATCA
GCCCATGTGGAGAGACCAGATTGAAAGGCCCTGAAACTACAAGCAAAGGAGATGCACAGC
CAGTCCCTAATTTTCCAGCCACCTCCAGCCACTGTCTAAGGGTAAGTGCATCAGATGCTG
AGTCAGAACTGCCAGGTAGAGCCTTTCTTAAATTCTTAACCCATGGAAACCCTGAGAGAA
GGTGACTACTGTTTAATAAGCCTTTTAAGTTCTAAGGTGGTTTGTAACACAGCAGTAGTA
ACTTCGGATCATTTCTGCTGCCTGTGTTACCCACATGGGGCTTCATAAAAAGGAGTTGAT
CCATGAGTGCTCAACACTTAGTTTCAAACTACTTTCTTGGGGCCACTTTGCCTTTTGTCA
AATTTTAGAGATTATTCAACATAGTATTGGAAGACCTAGCCGGAGCACTTAGGCAATAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               477-594, + strand, RNAz p=0.705008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-594, + strand, RNAz p=0.705008

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-594, gnl|bosTau2|chr8 (31952551-31953119)
               

               
               1-594, gnl|Hg17|chr9 (36203287-36203865)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-594, gnl|bosTau2|chr8 (31952551-31953119)
               

               
               1-594, gnl|Hg17|chr9 (36203287-36203865)

	1-594, gnl\|bosTau2\|chr8 (31952551-31953119)
	1-594, gnl\|Hg17\|chr9 (36203287-36203865)