Non-Coding RNA Search

Ss1.1-Pig3-SRG8003L23.5

Sequence:


               
               GCGGCCGCGCGGCCCCGCGCCCCTGCCGGCGCCCCCAAAGAGGAGGCCGGGGCGGCCCGG
CCCTGCCCGCGCGCCTGCGTGTGCGTCCCCGAGTCCCGGCACAGCGGCTGTGAGGCCCGG
GGCCTGCGCGCCGTGCCCCGCGGCTTCCCCAACGACACCCAGCTCCTGGACCTGAGGCGG
AACCACTTCCCCCTGGTGCCGCGAGCGGCCTTCCAGGGCCTGGGCCGGCTGGTGTCGCTG
CACCTGCAGCACTGCGGCATCACAGAGCTGGAGGCGGGCGCCCTGGCGGGCCTGGGCAGC
CTGATCTACCTCTACCTCTCTGACAACGGGCTCTCAGGCCTCAGCGCTACCGCCCTCGAA
GGGGCGCCCCGCCTTGGCTACCTGTACCTGGAGCGCAACCGCTTCCTGCAGGTGCCAGGG
GCCGCCTTGGGCGCCTTGCCCAGCCTCTTCTCCCTGCACCTCCAGGACAACGCCGTGGAC
CGCCTGGCACCCGGGGACCTGGCAGCCGGGCGGGCCCTGCGTTGGCTCTACCTGAGTGGG
AACCGTCTCACCCAAGTGTCCCCTGGGGCGCTGGGCCCATCTCATGAACTGGAGAAGCTG
CACCTGGACAGGAACCAGCTGCCAGAGGTGCCCACGGAGGCCCTGGAGGGGCTGCCTGCC
CTCCTGGAGCTGCAGCTCTCGGGGAACCCGCTCATGGCCCTGCAAGATGGGGCCTTCCGG
CCCGTGGGCCGCTCACTGCAACACCTCTTCCTGAACAGCAGTGGCCTGGAGCAAATTTCT
CCTGGGGCCTTCTCGGGCCTGGGACCCCAGCTCCAGAGCCTGTACCTGCATAATAACCAG
CTGCATGCTTTGCCCCCGCTGCCCGGTCTCCGCCAGCTGGAGCTTATTGACCTTAGTGGC
AATCCCTTCCATTGTGACTGCCAGCTGCTCCCGCTTCACAGGTGGCTCACTGGGCTGAAC
CTGCGTGTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGCGGCCCCGCGCCCCTGCCGGCGCCCCCAAAGAGGAGGCCGGGGCGGCCCGG
CCCTGCCCGCGCGCCTGCGTGTGCGTCCCCGAGTCCCGGCACAGCGGCTGTGAGGCCCGG
GGCCTGCGCGCCGTGCCCCGCGGCTTCCCCAACGACACCCAGCTCCTGGACCTGAGGCGG
AACCACTTCCCCCTGGTGCCGCGAGCGGCCTTCCAGGGCCTGGGCCGGCTGGTGTCGCTG
CACCTGCAGCACTGCGGCATCACAGAGCTGGAGGCGGGCGCCCTGGCGGGCCTGGGCAGC
CTGATCTACCTCTACCTCTCTGACAACGGGCTCTCAGGCCTCAGCGCTACCGCCCTCGAA
GGGGCGCCCCGCCTTGGCTACCTGTACCTGGAGCGCAACCGCTTCCTGCAGGTGCCAGGG
GCCGCCTTGGGCGCCTTGCCCAGCCTCTTCTCCCTGCACCTCCAGGACAACGCCGTGGAC
CGCCTGGCACCCGGGGACCTGGCAGCCGGGCGGGCCCTGCGTTGGCTCTACCTGAGTGGG
AACCGTCTCACCCAAGTGTCCCCTGGGGCGCTGGGCCCATCTCATGAACTGGAGAAGCTG
CACCTGGACAGGAACCAGCTGCCAGAGGTGCCCACGGAGGCCCTGGAGGGGCTGCCTGCC
CTCCTGGAGCTGCAGCTCTCGGGGAACCCGCTCATGGCCCTGCAAGATGGGGCCTTCCGG
CCCGTGGGCCGCTCACTGCAACACCTCTTCCTGAACAGCAGTGGCCTGGAGCAAATTTCT
CCTGGGGCCTTCTCGGGCCTGGGACCCCAGCTCCAGAGCCTGTACCTGCATAATAACCAG
CTGCATGCTTTGCCCCCGCTGCCCGGTCTCCGCCAGCTGGAGCTTATTGACCTTAGTGGC
AATCCCTTCCATTGTGACTGCCAGCTGCTCCCGCTTCACAGGTGGCTCACTGGGCTGAAC
CTGCGTGTGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6VCR8_HORSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6VCR8_HORSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               552-711, - strand, RNAz p=0.787674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-711, - strand, RNAz p=0.787674

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               157-771, gnl|bosTau2|chr19 (28962037-28962651)
               

               
               157-771, gnl|Hg17|chr17 (45901017-45900403)
               

               
               157-771, gnl|Mm7|chr11 (94674290-94674904)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-771, gnl|bosTau2|chr19 (28962037-28962651)
               

               
               157-771, gnl|Hg17|chr17 (45901017-45900403)
               

               
               157-771, gnl|Mm7|chr11 (94674290-94674904)

	157-771, gnl\|bosTau2\|chr19 (28962037-28962651)
	157-771, gnl\|Hg17\|chr17 (45901017-45900403)
	157-771, gnl\|Mm7\|chr11 (94674290-94674904)