Non-Coding RNA Search

Ss1.1-Pig3-SRG8003M04.3

Sequence:


               
               CACCACGCGAACTCTGGAGGGAGGTGAGGAGGTATAACAGGGGGTAAGGGAGGGAATGTA
TGTTCCTCCTGGGAGAAGATACCCCTTTGGTCTTATTGGCCTTTATAGGTCAAGGTCCAT
GTACAGGACGGAGAGGATGTGAGGAGTACATATGTGCCCATACAGACAGGGGATATGTGA
TGAATGGAGGATAGGATAGCTTATACGCTTTCCTTCCACGGACTCCTGCTATGATACCCT
GCGCCACGTGATAGAAAAACCTCAAGGGACACGGACGACTCTGGGGACCAGGACGATTCT
TCCGTCTCCTATTCCAGAGAGACAGTCTTTGTCGTCTTTCCCTATCCCCTAAAACACCAC
AGATCATATTCCAGGCAGCAGGCTGGGAATACAGAACAAAAGTCCTTGCATGCTACATTT
TGGCCAAACTCACTAACCCATCCCTTCTGCTCCAGGGCCAGCTTAATGAAGACAAATTGA
AGGGCAAACTGAGATCCTTAGAAAACCAGCTGTACACCTGTACCCAGGTAAGCATTCTGA
AGGACACATCTAGTTCAGGAAACGAGAATTAAATAGGAGAGAACATTTGAACCTCAATCC
TACTCTCTAGAAATGTCGCTACTAGGAATTAATGCACCTATTCCTACCCACCCGAACCTG
GCTTCATCTTTTTCACTTTAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCACGCGAACTCTGGAGGGAGGTGAGGAGGTATAACAGGGGGTAAGGGAGGGAATGTA
TGTTCCTCCTGGGAGAAGATACCCCTTTGGTCTTATTGGCCTTTATAGGTCAAGGTCCAT
GTACAGGACGGAGAGGATGTGAGGAGTACATATGTGCCCATACAGACAGGGGATATGTGA
TGAATGGAGGATAGGATAGCTTATACGCTTTCCTTCCACGGACTCCTGCTATGATACCCT
GCGCCACGTGATAGAAAAACCTCAAGGGACACGGACGACTCTGGGGACCAGGACGATTCT
TCCGTCTCCTATTCCAGAGAGACAGTCTTTGTCGTCTTTCCCTATCCCCTAAAACACCAC
AGATCATATTCCAGGCAGCAGGCTGGGAATACAGAACAAAAGTCCTTGCATGCTACATTT
TGGCCAAACTCACTAACCCATCCCTTCTGCTCCAGGGCCAGCTTAATGAAGACAAATTGA
AGGGCAAACTGAGATCCTTAGAAAACCAGCTGTACACCTGTACCCAGGTAAGCATTCTGA
AGGACACATCTAGTTCAGGAAACGAGAATTAAATAGGAGAGAACATTTGAACCTCAATCC
TACTCTCTAGAAATGTCGCTACTAGGAATTAATGCACCTATTCCTACCCACCCGAACCTG
GCTTCATCTTTTTCACTTTAGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-230, + strand, RNAz p=0.985609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-230, + strand, RNAz p=0.985609

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               40-325, gnl|bosTau2|chr16 (50800941-50801225)
               

               
               40-325, gnl|Hg17|chr1 (206334234-206334512)
               


               
               367-684, gnl|bosTau2|chr16 (50801311-50801626)
               

               
               367-684, gnl|Hg17|chr1 (206334600-206334918)
               

               
               367-684, gnl|Mm7|chr1 (192739887-192739560)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-325, gnl|bosTau2|chr16 (50800941-50801225)
               

               
               40-325, gnl|Hg17|chr1 (206334234-206334512)
               


               
               367-684, gnl|bosTau2|chr16 (50801311-50801626)
               

               
               367-684, gnl|Hg17|chr1 (206334600-206334918)
               

               
               367-684, gnl|Mm7|chr1 (192739887-192739560)

	40-325, gnl\|bosTau2\|chr16 (50800941-50801225)
	40-325, gnl\|Hg17\|chr1 (206334234-206334512)

	367-684, gnl\|bosTau2\|chr16 (50801311-50801626)
	367-684, gnl\|Hg17\|chr1 (206334600-206334918)
	367-684, gnl\|Mm7\|chr1 (192739887-192739560)