Ss1.1-Pig3-SRG8003N11.5
|
CTTACTACTAACTACCTACCCCATAGGATCCTGGTGCCTGTGCCGAGCACCGGGTAGAAC
CACGCGCTTCCCTTATATTCCCCTTACTTGGAGGCCTATGCCTTGCACCCCCGGACTGAC
ACGCCACACGCCGTTTTTCTGCACACTGCTTTTCATTTCAAAAGGCCCCATGGAAGATGG
GGGGAGTGTTTTATTTGCTTCATATCCTACAGCCGACCCGGGGCCTCCCTGGGGGCACGG
CGGGACTCGCTCTGGAACCAGAAGCCGGACCGCCGTCGTGCATATGAGTGGGTGCTGTGC
GGCGTCATGCATTCACGCGCGTCCCTGCAAGCATGTCCGCCAACCATCCCCCGGAACCGG
CCCTGTGTTTAACTTTCTTTGCCAGTCCTGATACCCCGTCAGATTTCTGGCGGTGCCACG
CCGCCCGCATGGGCTCTTTATGGGCCCTTATCAGCCTCTCCCAGTCAGCCTGGCCCGGCA
CAGCTGTTCCAGGCCCTCAGCCCCTCACTTTATCTGCTCGCACAGACCTCAACCTGGCAA
GCGGCGGGCCCGGCGCATGCTCCACATTCCCCAGGAAGCCGGCTGGGAACACAGCCGCCC
TGCTCCCAGAATCCTCTGGGAGTTCATTACCAGCCCGGGTACCCCAGCCCCGCAGCCAAG
GTGCGGACCGCGCCGCCCAGCCTCGCCGCCGGCATCATTAAAACTCCAACCTTCTGAAGA
GAAGAAAGAACAAAACCACAAATTTAGATTAATAAAGCATTTGTTGATTCTACAGCAATT
TAGCAGGCCCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTACTACTAACTACCTACCCCATAGGATCCTGGTGCCTGTGCCGAGCACCGGGTAGAAC
CACGCGCTTCCCTTATATTCCCCTTACTTGGAGGCCTATGCCTTGCACCCCCGGACTGAC
ACGCCACACGCCGTTTTTCTGCACACTGCTTTTCATTTCAAAAGGCCCCATGGAAGATGG
GGGGAGTGTTTTATTTGCTTCATATCCTACAGCCGACCCGGGGCCTCCCTGGGGGCACGG
CGGGACTCGCTCTGGAACCAGAAGCCGGACCGCCGTCGTGCATATGAGTGGGTGCTGTGC
GGCGTCATGCATTCACGCGCGTCCCTGCAAGCATGTCCGCCAACCATCCCCCGGAACCGG
CCCTGTGTTTAACTTTCTTTGCCAGTCCTGATACCCCGTCAGATTTCTGGCGGTGCCACG
CCGCCCGCATGGGCTCTTTATGGGCCCTTATCAGCCTCTCCCAGTCAGCCTGGCCCGGCA
CAGCTGTTCCAGGCCCTCAGCCCCTCACTTTATCTGCTCGCACAGACCTCAACCTGGCAA
GCGGCGGGCCCGGCGCATGCTCCACATTCCCCAGGAAGCCGGCTGGGAACACAGCCGCCC
TGCTCCCAGAATCCTCTGGGAGTTCATTACCAGCCCGGGTACCCCAGCCCCGCAGCCAAG
GTGCGGACCGCGCCGCCCAGCCTCGCCGCCGGCATCATTAAAACTCCAACCTTCTGAAGA
GAAGAAAGAACAAAACCACAAATTTAGATTAATAAAGCATTTGTTGATTCTACAGCAATT
TAGCAGGCCCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
332-792, gnl|bosTau2|chr18 (20611625-20611165) |
|
332-792, gnl|canFam2|chr2 (68478282-68477758) |
|
332-792, gnl|dasNov1|scaffold_7252 (52465-51922) |
|
332-792, gnl|echTel1|scaffold_291378 (115930-115375) |
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332-792, gnl|galGal2|chrUn (17930955-17931362) |
|
332-792, gnl|hg17|chr16 (48289629-48290156) |
|
332-792, gnl|Hg17|chr16 (48289852-48290317) |
|
332-792, gnl|loxAfr1|scaffold_14709 (53067-52535) |
|
332-792, gnl|mm7|chr8 (86425439-86425974) |
|
332-792, gnl|Mm7|chr8 (86425670-86426135) |
|
332-792, gnl|monDom2|scaffold_35 (14357134-14357686) |
|
332-792, gnl|oryCun1|scaffold_202746 (104806-104271) |
|
332-792, gnl|panTro1|chrUn_random (12118385-12118912) |
|
332-792, gnl|rheMac2|chr20 (47891838-47892366) |
|
332-792, gnl|rn3|chr19 (20553719-20553169) |
|
332-792, gnl|xenTro1|scaffold_410 (893606-894110) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
332-792, gnl|bosTau2|chr18 (20611625-20611165) |
|
332-792, gnl|canFam2|chr2 (68478282-68477758) |
|
332-792, gnl|dasNov1|scaffold_7252 (52465-51922) |
|
332-792, gnl|echTel1|scaffold_291378 (115930-115375) |
|
332-792, gnl|galGal2|chrUn (17930955-17931362) |
|
332-792, gnl|hg17|chr16 (48289629-48290156) |
|
332-792, gnl|Hg17|chr16 (48289852-48290317) |
|
332-792, gnl|loxAfr1|scaffold_14709 (53067-52535) |
|
332-792, gnl|mm7|chr8 (86425439-86425974) |
|
332-792, gnl|Mm7|chr8 (86425670-86426135) |
|
332-792, gnl|monDom2|scaffold_35 (14357134-14357686) |
|
332-792, gnl|oryCun1|scaffold_202746 (104806-104271) |
|
332-792, gnl|panTro1|chrUn_random (12118385-12118912) |
|
332-792, gnl|rheMac2|chr20 (47891838-47892366) |
|
332-792, gnl|rn3|chr19 (20553719-20553169) |
|
332-792, gnl|xenTro1|scaffold_410 (893606-894110) |
