Non-Coding RNA Search

Ss1.1-Pig3-SRG8003P03.3

Sequence:


               
               TAGGGTAGGCGGGGCAAGGTTTGCACCCTTGTTTTGTCTGCTTGAACATATCTGGGGGCC
CGGCGGTGCCCATAAAATTGAGCTTTCTTTCCTGGCCACTGAGCATTCCTGTGTGGGTAG
AAAACATGCCTCTGTCTTCTCTTTGGTTGCCCCCCTTTCCCTGGGCCAAGTTCCTGGCTT
CTGAGCAGGAGACAGAGTTGTGGGTGCTGACTGCAATGTCTGGTAGGGTGACCTGCTTCT
CTTTATCCTGTTGGTGGCAAGGAGGGAGGGCTCCGGGAGATTGCAGGGAGGGTTGGATGT
GCTGTGGTAAGAAAGATAGCCCCCAGGGGCCAGGTGTGATAGTGTTCTCAGACAGCCAGG
ATAGGTGGCTTCCCTTCCCTGAGGACAGCGACCCAGGGGTGGGCCTGCTGGGGTGCATCT
GTGCCTCACTGCCTCCTCTCTCTCTGTCTCTGACTCTCTCATCATGGAGCACAATCTGAC
TCCCTGCAGAGTAGGAGGAGCCCAGAGGGCAGTGGGGGCATGCCCGGTGGCCTGGGGGGG
TAACCTGCACTCTCTGCCCTTTTTCCAGGTGTGGGTTGGGAGCAGCAGCGGCCTGCCGCC
CCTGGAATCTCTTCCTAGCGACCTGCCATCATGGGACTTTGCCCAGCCTGCTTTGTGGAG
GTCGTCCCATTCCGTTCCTGACACCGCCTTTTCCCTTTCTCTAAAAAAGTCCTTCCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGGTAGGCGGGGCAAGGTTTGCACCCTTGTTTTGTCTGCTTGAACATATCTGGGGGCC
CGGCGGTGCCCATAAAATTGAGCTTTCTTTCCTGGCCACTGAGCATTCCTGTGTGGGTAG
AAAACATGCCTCTGTCTTCTCTTTGGTTGCCCCCCTTTCCCTGGGCCAAGTTCCTGGCTT
CTGAGCAGGAGACAGAGTTGTGGGTGCTGACTGCAATGTCTGGTAGGGTGACCTGCTTCT
CTTTATCCTGTTGGTGGCAAGGAGGGAGGGCTCCGGGAGATTGCAGGGAGGGTTGGATGT
GCTGTGGTAAGAAAGATAGCCCCCAGGGGCCAGGTGTGATAGTGTTCTCAGACAGCCAGG
ATAGGTGGCTTCCCTTCCCTGAGGACAGCGACCCAGGGGTGGGCCTGCTGGGGTGCATCT
GTGCCTCACTGCCTCCTCTCTCTCTGTCTCTGACTCTCTCATCATGGAGCACAATCTGAC
TCCCTGCAGAGTAGGAGGAGCCCAGAGGGCAGTGGGGGCATGCCCGGTGGCCTGGGGGGG
TAACCTGCACTCTCTGCCCTTTTTCCAGGTGTGGGTTGGGAGCAGCAGCGGCCTGCCGCC
CCTGGAATCTCTTCCTAGCGACCTGCCATCATGGGACTTTGCCCAGCCTGCTTTGTGGAG
GTCGTCCCATTCCGTTCCTGACACCGCCTTTTCCCTTTCTCTAAAAAAGTCCTTCCCAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               577-696, - strand, RNAz p=0.945833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               577-696, - strand, RNAz p=0.945833

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-204, gnl|bosTau2|chr17 (43616906-43616703)
               

               
               1-204, gnl|canFam2|chr26 (27322146-27322483)
               

               
               1-204, gnl|dasNov1|scaffold_23863 (11329-11687)
               

               
               1-204, gnl|echTel1|scaffold_273765 (1496-1355)
               

               
               1-204, gnl|hg17|chr22 (30062504-30062864)
               

               
               1-204, gnl|Hg17|chr22 (30062810-30062601)
               

               
               1-204, gnl|loxAfr1|scaffold_389 (33504-33866)
               

               
               1-204, gnl|mm7|chr11 (3246173-3245843)
               

               
               1-204, gnl|Mm7|chr11 (3245886-3246105)
               

               
               1-204, gnl|panTro1|chr23 (30164168-30164528)
               

               
               1-204, gnl|rheMac2|chr10 (75232719-75233078)
               

               
               1-204, gnl|rn3|chr14 (83919787-83919472)
               


               
               223-362, gnl|bosTau2|chr17 (43616707-43616562)
               

               
               223-362, gnl|Hg17|chr22 (30062605-30062398)
               

               
               223-362, gnl|Mm7|chr11 (3246085-3246280)
               


               
               402-720, gnl|bosTau2|chr17 (43616574-43616243)
               

               
               402-720, gnl|Hg17|chr22 (30062410-30062072)
               

               
               402-720, gnl|Mm7|chr11 (3246268-3246610)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-204, gnl|bosTau2|chr17 (43616906-43616703)
               

               
               1-204, gnl|canFam2|chr26 (27322146-27322483)
               

               
               1-204, gnl|dasNov1|scaffold_23863 (11329-11687)
               

               
               1-204, gnl|echTel1|scaffold_273765 (1496-1355)
               

               
               1-204, gnl|hg17|chr22 (30062504-30062864)
               

               
               1-204, gnl|Hg17|chr22 (30062810-30062601)
               

               
               1-204, gnl|loxAfr1|scaffold_389 (33504-33866)
               

               
               1-204, gnl|mm7|chr11 (3246173-3245843)
               

               
               1-204, gnl|Mm7|chr11 (3245886-3246105)
               

               
               1-204, gnl|panTro1|chr23 (30164168-30164528)
               

               
               1-204, gnl|rheMac2|chr10 (75232719-75233078)
               

               
               1-204, gnl|rn3|chr14 (83919787-83919472)
               


               
               223-362, gnl|bosTau2|chr17 (43616707-43616562)
               

               
               223-362, gnl|Hg17|chr22 (30062605-30062398)
               

               
               223-362, gnl|Mm7|chr11 (3246085-3246280)
               


               
               402-720, gnl|bosTau2|chr17 (43616574-43616243)
               

               
               402-720, gnl|Hg17|chr22 (30062410-30062072)
               

               
               402-720, gnl|Mm7|chr11 (3246268-3246610)

	1-204, gnl\|bosTau2\|chr17 (43616906-43616703)
	1-204, gnl\|canFam2\|chr26 (27322146-27322483)
	1-204, gnl\|dasNov1\|scaffold_23863 (11329-11687)
	1-204, gnl\|echTel1\|scaffold_273765 (1496-1355)
	1-204, gnl\|hg17\|chr22 (30062504-30062864)
	1-204, gnl\|Hg17\|chr22 (30062810-30062601)
	1-204, gnl\|loxAfr1\|scaffold_389 (33504-33866)
	1-204, gnl\|mm7\|chr11 (3246173-3245843)
	1-204, gnl\|Mm7\|chr11 (3245886-3246105)
	1-204, gnl\|panTro1\|chr23 (30164168-30164528)
	1-204, gnl\|rheMac2\|chr10 (75232719-75233078)
	1-204, gnl\|rn3\|chr14 (83919787-83919472)

	223-362, gnl\|bosTau2\|chr17 (43616707-43616562)
	223-362, gnl\|Hg17\|chr22 (30062605-30062398)
	223-362, gnl\|Mm7\|chr11 (3246085-3246280)

	402-720, gnl\|bosTau2\|chr17 (43616574-43616243)
	402-720, gnl\|Hg17\|chr22 (30062410-30062072)
	402-720, gnl\|Mm7\|chr11 (3246268-3246610)